Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62910 586 / 0 APG3 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) AT2G47020 227 / 3e-70 Peptide chain release factor 1 (.1.2) AT5G36170 138 / 2e-36 ATPRFB, HCF109 high chlorophyll fluorescent 109 (.1.2.3) AT1G56350 115 / 3e-28 Peptide chain release factor 2 (.1) AT1G33330 47 / 1e-05 Class I peptide chain release factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029444 [exp] 755 / 0 AT3G62910 632 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10009980 [exp] 228 / 1e-70 AT2G47020 603 / 0.0 Peptide chain release factor 1 (.1.2) Lus10038039 [exp] 226 / 8e-70 AT2G47020 600 / 0.0 Peptide chain release factor 1 (.1.2) Lus10036446 [exp] 142 / 6e-38 AT5G36170 651 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10041119 [exp] 134 / 2e-35 AT5G36170 627 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10031411 [exp] 112 / 6e-27 AT1G56350 660 / 0.0 Peptide chain release factor 2 (.1) Lus10010922 [exp] 112 / 7e-27 AT1G56350 646 / 0.0 Peptide chain release factor 2 (.1) Lus10008558 [exp] 50 / 2e-06 AT1G33330 267 / 2e-89 Class I peptide chain release factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G133400 [exp] 580 / 0 AT3G62910 549 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Potri.014G114000 [exp] 222 / 3e-68 AT2G47020 579 / 0.0 Peptide chain release factor 1 (.1.2) Potri.008G075800 [exp] 140 / 6e-37 AT5G36170 671 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Potri.002G188200 [exp] 137 / 2e-36 AT2G47020 380 / 3e-130 Peptide chain release factor 1 (.1.2) Potri.013G009200 [exp] 125 / 1e-31 AT1G56350 676 / 0.0 Peptide chain release factor 2 (.1) Potri.006G045200 [exp] 67 / 5e-12 AT3G57190 426 / 7e-148 peptide chain release factor 3, peptide chain release factor, putative (.1) Potri.010G181600 [exp] 51 / 2e-08 AT5G36170 88 / 2e-22 high chlorophyll fluorescent 109 (.1.2.3) Potri.019G063800 [exp] 48 / 6e-06 AT1G33330 211 / 3e-68 Class I peptide chain release factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03462 [flax] [poplar] PCRF PCRF domain CL0337 [flax] [poplar] RF PF00472 [flax] [poplar] RF-1 RF-1 domain
Representative CDS sequence Show only first row Show all	>Lus10005944 pacid=23146071 polypeptide=Lus10005944 locus=Lus10005944.g ID=Lus10005944.BGIv1.0 annot-version=v1.0 ATGGCCACTTTGACAACGAACTTTGCAGCTCGATCATTTCACAATCACCACAAATTCGCTATACCAAGGCGCCCTTGCGACTGTGTGTTCTTCAGACACC TCTCTCCGGCGCGCATCACTCCGAGAATCGTTTGCATGGCGGAACCGCACTTGATTGCGAAGCTTGAATCCGCTGAGAAGACGTGGAAGGAATTTTCGGT CAGGCTTGCTGATCCAGATGTTGTTAACAATCCTCATGAGTACAAAAAATTGGCCCAATCTGTCTCAGAGCTGGATGAGGTTGTCTCAACGTTCAGGAGG TTCAAGGATTGTGAGAAGCAGTTAGAAGAGACCAAAGCCCTTTTGAAGGAGGTTGGAAATGATGATGATATGGCAGAGATGATAACATCTGAAATTGACT CTTTATCACGCGAAGTGAAAGAACTTGAGGAAAAGCTTAAGTTGATGCTTCTTCCTAGCGATCCGCTTGATGCAAGAAATATAATGCTTGAAGTAAGGGC TGGCACGGGTGGTGATGAAGCTGGGATTTGGGCTGGTGATCTTGTCCGCATGTATCAAAAGTATAGTGAACGGAACTCATGGAAGTTTGCGGGTGTCTCA AGTTCCGAGGCTGAAAAAGGTGGATACAAAACCGTTGTGATGGAAATCAAGGGAAAACGAGTATATAGCAAATTAAAGTATGAATCTGGTGTCCATCGAG TTCAACGTGTTCCTTTAACAGAAACACAAGGCCGAGTCCACACTTCCACTGCAACAGTAGCAATCATGCCCGAGGTTGATGAAGTTGAGGTGGTAATTGA CCCAAAAGATATTGAGCTGTCGACAGCGAGGGCTGGAGGAGCTGGAGGGCAAAATGTCAACAAGGTGGAGACGGCAGTCGATCTTTTTCACAAACCAACA GGAATTCGCATATTTTGTACTGAAGAAAGGTCACAGTTACAAAATAAACACCGTGCCTTCCAGCTTCTCCGTTCAAAACTGTATGAGATGAGAGTGAAGG AGCAACAAGAGAAAACAAGGAGCGAAAGAAAGTTACAGGTGGGTACGGGTGCTCGTTCAGAGAAGATTCGCACATACAACTACAAAGACAATAGAGTGAC TGATCACCGTTTAAAGATGAACTTTGAGCTCACCTCGTTCCTCGACGGAGCAATAGAGGATGCAGTACAGGCCTGTGCAGCAATGGAGCAGAAGGAATTG ATGGAGGAGCTCGCGGATTCGGTAGCCACACCAGCCGGCTGA
AA sequence Show only first row Show all	>Lus10005944 pacid=23146071 polypeptide=Lus10005944 locus=Lus10005944.g ID=Lus10005944.BGIv1.0 annot-version=v1.0 MATLTTNFAARSFHNHHKFAIPRRPCDCVFFRHLSPARITPRIVCMAEPHLIAKLESAEKTWKEFSVRLADPDVVNNPHEYKKLAQSVSELDEVVSTFRR FKDCEKQLEETKALLKEVGNDDDMAEMITSEIDSLSREVKELEEKLKLMLLPSDPLDARNIMLEVRAGTGGDEAGIWAGDLVRMYQKYSERNSWKFAGVS SSEAEKGGYKTVVMEIKGKRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEVDEVEVVIDPKDIELSTARAGGAGGQNVNKVETAVDLFHKPT GIRIFCTEERSQLQNKHRAFQLLRSKLYEMRVKEQQEKTRSERKLQVGTGARSEKIRTYNYKDNRVTDHRLKMNFELTSFLDGAIEDAVQACAAMEQKEL MEELADSVATPAG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10005944 [exp]	0	1
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043145 [exp]	2.4	0.9468
AT3G49140			Pentatricopeptide repeat (PPR)...		Lus10038836 [exp]	5.3	0.9193
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10042897 [exp]	5.4	0.9565
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10029444 [exp]	10.6	0.9291
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10038404 [exp]	11.2	0.9426
AT3G06670			binding (.1.2)		Lus10021547 [exp]	12.0	0.9371
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10010515 [exp]	12.0	0.9275
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10000288 [exp]	14.1	0.9231
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10030091 [exp]	14.7	0.9373
AT5G46420			16S rRNA processing protein Ri...		Lus10011969 [exp]	14.8	0.8889

Compare expression of checked genes

Lus10005944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.