Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01040 548 / 0 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029447 [exp] 824 / 0 AT4G01040 560 / 0.0 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G096700 [exp] 567 / 0 AT4G01040 565 / 0.0 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10005946 pacid=23146032 polypeptide=Lus10005946 locus=Lus10005946.g ID=Lus10005946.BGIv1.0 annot-version=v1.0 ATGGCGAAGAAGAGAAATGTCCGGCAAGCAGCTAACACGAGCCACAGTCGAACCAAACGCGTGGATGAACCTACGCCAGGAAACCAATTCAGTGAAGCAT CCTCCTCTGATCGGAGGCTCCTTGCCATTTTCTTCGTCTTCTTCGTAGCGATTCCCGCCATCTCTGTACTTCTGTACCGATTCAAGTTCGCTCCGGCTCT ACCTGACCTTTCGGAATCGATTGAGCAAAAGCAAGAAGCCCGTTTCAAAGTTGATTTGAATTACCACGACATCCTGGAAGAGAATTCGAAGGTATCCGAA AATGGATCTCAACGCCATTATGAGTATCCTGTTTTAGGCTACATTACACCATGGAATTCCAAAGGCTATGAAATAGCGAAGAAGTTTGCTGATAAGTTTA CGCACGTATCCCCTGTATGGTATGATCTCAAGAGCCAAGGTTCTGGACTGGTGCTCGAGGGTAGACATAATGCTGACAGAAGCTGGATTTCGGAGCTGAG GGAGAATGGACATGCCCTGGTGTTACCCAGAGTTGTACTGGAAGCATTTCCACAAGAGCTGCTTAAAAAGAAGAAACTAAGGAATAGAGCAATTGAACTC ATAGTAACAGAGTGCATGGAGATGGAATACGATGGAATTGTGCTCGAGTCCTGGTCAAGATGGGCGGGATATGGTGTCTTGCATGATCCTGACATGAGAA ATAAGGCACTACAGTTCGTCAAGAAACTTGGCGACAAACTTCATTCTGTGAGCTCATTGAGGAACAATAAGCAACCATTACAGTTGGTCTATGTTATAGG TCCACCAAGTTCAGAACAGCTTCAAACGCACGACTTCGGCCCAAACGATCTCCGCAGTCTGATTAGTGCCGTAGATGGGTTTTCCTTGATGACTTACGAC TTCTCAAATCCTCAAAACCCAGGACCAAATGCTCCTCTAAAGTGGATACAGCGAACCTTGCAGCTGCTACTTGACCCTGCTAATAATGCTCAAAGCCTGG CACCAAAGATATTCCTCGGTCTCAACTTCTACGGGAACGACTTCTCTCTTTCAGGAGGTGGTGGGGCTATTCTCGGGCGGGACTACCTATCCTTACTAGA TAAGCACAAGCCTCAATTGCAGTGGGAGCCGAAGAGTGCGGAACATTTCTTCGTGTATGTGGACGATGACGGGAAGAGGCATGCTGTGTTCTATCCGACA TTCCCGTCGATCTCTGTACGGCTTGAAGAAGCAAGAACATGGGGAACTGGTATCTCAATCTGGGAAATTGGACAAGGTTTGGATTATTTCTATGATCTCT TGTAG
AA sequence Show only first row Show all	>Lus10005946 pacid=23146032 polypeptide=Lus10005946 locus=Lus10005946.g ID=Lus10005946.BGIv1.0 annot-version=v1.0 MAKKRNVRQAANTSHSRTKRVDEPTPGNQFSEASSSDRRLLAIFFVFFVAIPAISVLLYRFKFAPALPDLSESIEQKQEARFKVDLNYHDILEENSKVSE NGSQRHYEYPVLGYITPWNSKGYEIAKKFADKFTHVSPVWYDLKSQGSGLVLEGRHNADRSWISELRENGHALVLPRVVLEAFPQELLKKKKLRNRAIEL IVTECMEMEYDGIVLESWSRWAGYGVLHDPDMRNKALQFVKKLGDKLHSVSSLRNNKQPLQLVYVIGPPSSEQLQTHDFGPNDLRSLISAVDGFSLMTYD FSNPQNPGPNAPLKWIQRTLQLLLDPANNAQSLAPKIFLGLNFYGNDFSLSGGGGAILGRDYLSLLDKHKPQLQWEPKSAEHFFVYVDDDGKRHAVFYPT FPSISVRLEEARTWGTGISIWEIGQGLDYFYDLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01040			Glycosyl hydrolase superfamily...		Lus10005946 [exp]	0	1
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	3.2	0.8028
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	3.3	0.8278
AT1G20770			unknown protein		Lus10030736 [exp]	4.5	0.8074
AT1G67590			Remorin family protein (.1.2)		Lus10036996 [exp]	6.0	0.8169
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10020580 [exp]	6.9	0.8192
AT1G50000			methyltransferases (.1.2)		Lus10035666 [exp]	8.1	0.7741
AT1G04590		EMB2748	unknown protein		Lus10015943 [exp]	9.5	0.7851
AT1G58280			Phosphoglycerate mutase family...		Lus10032821 [exp]	10.2	0.7603
AT2G45320			unknown protein		Lus10030280 [exp]	11.2	0.7948
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10012698 [exp]	11.7	0.7229

Compare expression of checked genes

Lus10005946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.