Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01050 353 / 2e-117 TROL thylakoid rhodanese-like (.1) AT3G25480 97 / 2e-22 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029448 [exp] 640 / 0 AT4G01050 404 / 2e-138 thylakoid rhodanese-like (.1) Lus10005853 [exp] 88 / 4e-19 AT3G25480 219 / 1e-70 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10001215 [exp] 79 / 4e-16 AT3G25480 208 / 2e-66 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G096500 [exp] 387 / 5e-131 AT4G01050 388 / 5e-132 thylakoid rhodanese-like (.1) Potri.002G169100 [exp] 367 / 3e-123 AT4G01050 400 / 1e-136 thylakoid rhodanese-like (.1) Potri.002G239800 [exp] 97 / 5e-22 AT3G25480 251 / 2e-82 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005947 pacid=23146065 polypeptide=Lus10005947 locus=Lus10005947.g ID=Lus10005947.BGIv1.0 annot-version=v1.0 ATGGAGAGCCTCAATGCAGCAAGCTTAAAACCATTATCCATCCTCCCCAAAACTAGCAGAAGAAGAAGCATAAACGTTCCACCATCTCACAAAGTCTCGA GTTCGAAACCGTCTTCGCAGCAGGCGACAATCAATGGAGGGCTAATGCTACTCTCGTCACTTTTTACCACTCCCCTAGCTAAAGCCCTCACCTACGAGGA AGCTCTGGAGCTATCAGCAGGAGGAGCAGACGGCTTATCTGGGTTCGATGCAAATGAGTTTGTCGACACCATAATTGGGTTCGGAACCGACAACCCGATT CTGGTCGCTGGCGGAGTTGCCGCTGCTGCTTTAGCGGTTCCTCTGGTTCTGTCTCAGGTTCTGAAATCCCCGAAGTCGTTTGGGGTTGAGTCTGCTAGAA AGGCTTACGAGGTTCTGGGTGAAGATCCAGGTGCTCAATTGCTCGATATCAGGGCTGCTTCCGAGCTCAGACAAGTGGGTGTTCCTGACGTTAAAGGTTT GGGGAAGAAGGCCGTGCTGGTTGCTTATAAGGGTGAGGACAAAGCTGGGTTTTTGAAGAGGTTGGGTTTGAAGTTCAAGCAACCTGAGAGTACTACATTG TTCGTTTTGGACAAATTTGATGGGAACTCTGAATTGGTTGCTGAGCTAGTGACTGGAAATGGATTCAAAGCTGCTTATGCAATTAAAGATGGTGCTGAAG GACCTAGGGGATGGCAGAATAGTGGTCTTCCCTGGACTGCACCGAGTAAAGGACTGAATCTTGATTTCAGCAACTTGACTGAGGCTATCAGTGATCTGGT TGGAGCGGACTCGGATCCCTTGTCCGTGACTTTAGGAGTTGCAGCAGCAACTGGGTTGGGTGCTCTGGCCTTCACAGAGGTAGAAACTCTACTTCAACTA CTAGGCTCAGCTGCACTGATCCAATTTGCGAGCAAGAAACTCCTGTTCGCGGAGGATCGGAAGGCAACTCTGAAGCAAGTCGACGAGTTTCTTACTACAA AGATTGCACCAAAGGAGCTTCTTGGTGAGATCAAGGAAATCGGGCAAGCTCTTCTACCAACAAATGGAACTGGCAAAGCTCTTCCTGCACCAACCGAATC CAGTCCTCCAGCTGCAGCTGCAGAGCCAGTTTCTAAAGTCAATTCTGTGCCGAAACCAGAAGTTAAAGCGGAATCAGTTCCCGAGTTGCCAAGGCCACTC TCACCTTATACATCATATCCAGATTTGAAGCCTCCAACATCTCCAGCTCCACCACAAAAACCAGCAGCAGTTGCGGTCGAGCCTGTGCCTGAACCAGAAG CTAAAGTAGCAGAATCAGCTCCCCAGGTGACTCCTGTGCCGGAACCAGAAGCTAAAACCGAATCGGTTCCCAAGTTGTCAAGGCCATTGTCACCTTATCC TCAATATCCAGATTTGAAGCCTCCGACATCTCCTACTCCATCGCAGCCTTGA
AA sequence Show only first row Show all	>Lus10005947 pacid=23146065 polypeptide=Lus10005947 locus=Lus10005947.g ID=Lus10005947.BGIv1.0 annot-version=v1.0 MESLNAASLKPLSILPKTSRRRSINVPPSHKVSSSKPSSQQATINGGLMLLSSLFTTPLAKALTYEEALELSAGGADGLSGFDANEFVDTIIGFGTDNPI LVAGGVAAAALAVPLVLSQVLKSPKSFGVESARKAYEVLGEDPGAQLLDIRAASELRQVGVPDVKGLGKKAVLVAYKGEDKAGFLKRLGLKFKQPESTTL FVLDKFDGNSELVAELVTGNGFKAAYAIKDGAEGPRGWQNSGLPWTAPSKGLNLDFSNLTEAISDLVGADSDPLSVTLGVAAATGLGALAFTEVETLLQL LGSAALIQFASKKLLFAEDRKATLKQVDEFLTTKIAPKELLGEIKEIGQALLPTNGTGKALPAPTESSPPAAAAEPVSKVNSVPKPEVKAESVPELPRPL SPYTSYPDLKPPTSPAPPQKPAAVAVEPVPEPEAKVAESAPQVTPVPEPEAKTESVPKLSRPLSPYPQYPDLKPPTSPTPSQP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10005947 [exp]	0	1
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10029448 [exp]	1.0	0.9736
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10000554 [exp]	1.7	0.9364
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10010385 [exp]	2.4	0.9386
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10028510 [exp]	4.6	0.9231
AT5G58330			lactate/malate dehydrogenase f...		Lus10037935 [exp]	6.3	0.9281
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036601 [exp]	6.6	0.9166
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10034205 [exp]	6.6	0.9331
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Lus10034513 [exp]	7.3	0.9037
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10008594 [exp]	7.7	0.9198
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Lus10036858 [exp]	8.5	0.8917

Compare expression of checked genes

Lus10005947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.