Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53200 87 / 1e-23 MYB TRY TRIPTYCHON, Homeodomain-like superfamily protein (.1) AT4G01060 86 / 1e-23 MYB CPL3, ETC3 ENHANCER OF TRY AND CPC 3, CAPRICE-like MYB3 (.1.2.3) AT2G30420 84 / 2e-22 MYB ETC2 ENHANCER OF TRY AND CPC 2, Homeodomain-like superfamily protein (.1) AT2G46410 81 / 1e-21 MYB CPC CAPRICE, Homeodomain-like superfamily protein (.1) AT2G30424 81 / 2e-21 MYB TCL2 TRICHOMELESS 2, Homeodomain-like superfamily protein (.1) AT2G30432 77 / 3e-20 MYB TCL1 TRICHOMELESS1, Homeodomain-like superfamily protein (.1) AT1G01380 72 / 5e-18 MYB ETC1 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) AT5G52600 59 / 8e-12 MYB AtMYB82 myb domain protein 82 (.1) AT1G66370 59 / 1e-11 MYB ATMYB113 myb domain protein 113 (.1) AT3G13540 55 / 3e-10 MYB ATMYB5, ATM2 myb domain protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038822 [exp] 77 / 6e-20 AT5G53200 96 / 1e-27 TRIPTYCHON, Homeodomain-like superfamily protein (.1) Lus10029451 [exp] 77 / 2e-19 ND 40 / 5e-05 Lus10014933 [exp] 75 / 3e-19 AT2G46410 96 / 1e-27 CAPRICE, Homeodomain-like superfamily protein (.1) Lus10028513 [exp] 61 / 2e-12 AT1G66370 205 / 3e-65 myb domain protein 113 (.1) Lus10009130 [exp] 61 / 3e-12 AT1G66370 202 / 3e-64 myb domain protein 113 (.1) Lus10028514 [exp] 60 / 6e-12 AT1G66370 179 / 1e-55 myb domain protein 113 (.1) Lus10038092 [exp] 60 / 7e-12 AT5G52600 185 / 1e-58 myb domain protein 82 (.1) Lus10006647 [exp] 60 / 7e-12 AT5G52600 186 / 6e-59 myb domain protein 82 (.1) Lus10009129 [exp] 58 / 3e-11 AT1G66370 179 / 2e-55 myb domain protein 113 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G096300 [exp] 89 / 9e-25 AT2G46410 114 / 1e-34 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.002G168900 [exp] 89 / 2e-24 AT5G53200 122 / 2e-37 TRIPTYCHON, Homeodomain-like superfamily protein (.1) Potri.015G022000 [exp] 79 / 7e-21 AT5G53200 104 / 2e-30 TRIPTYCHON, Homeodomain-like superfamily protein (.1) Potri.012G031200 [exp] 79 / 4e-20 AT5G53200 102 / 6e-29 TRIPTYCHON, Homeodomain-like superfamily protein (.1) Potri.004G021300 [exp] 66 / 8e-16 AT1G01380 67 / 1e-16 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) Potri.011G026300 [exp] 65 / 2e-15 AT1G01380 68 / 9e-17 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) Potri.017G037000 [exp] 64 / 5e-15 AT2G46410 69 / 4e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.007G122800 [exp] 64 / 5e-15 AT2G46410 69 / 3e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.004G015100 [exp] 61 / 1e-13 AT2G46410 71 / 1e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.017G125800 [exp] 61 / 2e-12 AT1G66370 190 / 5e-60 myb domain protein 113 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005949 pacid=23146060 polypeptide=Lus10005949 locus=Lus10005949.g ID=Lus10005949.BGIv1.0 annot-version=v1.0 ATGGAAGACAAGGTGGTTTGCCGGCGAAAGAAGAAGGAAAGCTACGCCGCCGAACGTAAACCTGCAGCCGCCATGGCTTCTTGCTCTTGCTCCGATGATC AGGAAGTGACGAGCAAAGAATGGAAGTTGATAGAGATGTCTGAAGCAGAAGTGGATCTCATCCATAGAATGCACAAGCTTCTTGGAGACAGGTGGGATTT GATAGCTGGGAGAATTCCAGGGAGAAAAGCCGAAGAAATTGAGAGATTCTGGATTATGAGGACAATCCTCTGTCGGAAGAACATTTAG
AA sequence Show only first row Show all	>Lus10005949 pacid=23146060 polypeptide=Lus10005949 locus=Lus10005949.g ID=Lus10005949.BGIv1.0 annot-version=v1.0 MEDKVVCRRKKKESYAAERKPAAAMASCSCSDDQEVTSKEWKLIEMSEAEVDLIHRMHKLLGDRWDLIAGRIPGRKAEEIERFWIMRTILCRKNI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01060	MYB	CPL3, ETC3	ENHANCER OF TRY AND CPC 3, CAP...		Lus10005949 [exp]	0	1
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10031540 [exp]	3.2	0.9100
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10000633 [exp]	5.7	0.9238
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10027363 [exp]	6.7	0.9055
AT2G42975			unknown protein		Lus10007332 [exp]	9.4	0.8968
AT2G36895			unknown protein		Lus10023001 [exp]	9.8	0.9054
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10012360 [exp]	10.7	0.8800
AT5G19940			Plastid-lipid associated prote...		Lus10026221 [exp]	12.2	0.9073
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10026089 [exp]	13.7	0.9058
AT3G18430			Calcium-binding EF-hand family...		Lus10029670 [exp]	17.1	0.8818
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10003323 [exp]	17.9	0.8891

Compare expression of checked genes

Lus10005949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.