Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01070 546 / 0 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 515 / 0 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 481 / 2e-167 UDP-Glycosyltransferase superfamily protein (.1) AT2G18570 343 / 9e-114 UDP-Glycosyltransferase superfamily protein (.1) AT3G50740 340 / 4e-112 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT5G26310 329 / 5e-108 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT5G66690 326 / 6e-107 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 283 / 3e-90 UDP-Glycosyltransferase superfamily protein (.1) AT2G18560 278 / 2e-89 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 262 / 3e-82 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029452 [exp] 907 / 0 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 494 / 9e-173 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 491 / 3e-171 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10039588 [exp] 419 / 4e-143 AT4G01070 419 / 2e-143 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001906 [exp] 388 / 7e-131 AT4G01070 431 / 1e-147 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003900 [exp] 374 / 2e-125 AT4G01070 411 / 4e-140 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001905 [exp] 359 / 2e-119 AT1G01420 391 / 3e-132 UDP-glucosyl transferase 72B3 (.1) Lus10024035 [exp] 355 / 9e-118 AT3G50740 486 / 3e-169 UDP-glucosyl transferase 72E1 (.1) Lus10041713 [exp] 355 / 1e-117 AT2G18570 415 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G096100 [exp] 638 / 0 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G168600 [exp] 616 / 0 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096000 [exp] 518 / 0 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.003G138200 [exp] 514 / 4e-180 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041800 [exp] 411 / 6e-140 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G030500 [exp] 370 / 7e-124 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G030400 [exp] 365 / 8e-122 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.007G030300 [exp] 342 / 6e-113 AT3G50740 496 / 1e-173 UDP-glucosyl transferase 72E1 (.1) Potri.014G041900 [exp] 332 / 9e-110 AT4G01070 295 / 2e-95 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G029800 [exp] 333 / 1e-109 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10005950 pacid=23146047 polypeptide=Lus10005950 locus=Lus10005950.g ID=Lus10005950.BGIv1.0 annot-version=v1.0 ATGGCGGATAATAATACCCAAACTCCACACATCGCAATTCTCCCCAGCCCAGGTATGGGCCACCTGATCCCACTCGTCGAGCTCACCAAACGCCTCGTCA CCTGCCACAACCTCAACGTCACCTTCATTATCCCCACCAGCACCGACGCCCCTCCTTCCGCCGCCATGAAATCCGTCCTAGACTCCCTCCCTTCCGCCTC CGTCGACTCAATCTTTCTCCCGCCGGTCTCACTCCACGACGTCGTCTTCAATTCCTCTGCCTCTGATGCCAAAATCGAAACCATCATCCCCCTCCCCGCC GCCCAATCCCTCCCTCCCCTCCGCGACGCCTTCCGCTCCATCGCCACCTCCGGCCGCCGCCGTCTCTCCGCTCTCGTCGTCGACCTGTTCGGCACCGACG CCTTCGACGTCGCCGCCGAATTCGGCGCTGCTTCTTATGTTTTCTATCCGTCCACCGCCATGGCGCTGTCGCTGTTCCTTTACTTGCCGACATTGGACGC GGAGGTTACAGGGGCGTATTCGGATCTCGACGAGCCGGTTCAAATACCCGGGTGTATACCTGTAAATGGAACGGATCTTCTCGACCCGGTCCAGGATCGG AACAACGACGCCTACAGTTGGCTCCTCCACCATGCGAAACGGTACCGTTTGGCAGATGGCGTTATGGTCAACAGCTTCCCTGAGCTAGAGCCGGGGGCAA TTAAATCGCTACAAAAAACAGAGGACCAACTCGGGAAAAAACCTATGGTTTACCCGGTTGGACCGCTGGTCAACATGGACTCCTCAAAGAAAACCGGGTC CGAATGTCTCGACTGGCTTGACGTTCAGCCGAGCGGTTCCGTGTTATTCGTGTCGTTCGGGAGTGGTGGGACACTCTCGTATGATCAGATAAACGAGCTG GCATTTGGGTTGGAGATGAGTGAGCAACGATTCATCTGGGTGGTCCGTAGTCCCGATGATAAAACTGCGAACGCCTCGTTCTTCACGGTCCAATCTCAAA ACGACCCGTTTCACTTCCTGCCCAAGGGATTTCTCGACCGAACAAGAGAGCGAGGCCTCGTGGTGTCTTCATGGGCCCCACAAGCCCAAATCTTGAGCCA CAACTCGACCGGAGGGTTCTTGACCCACTGTGGATGGAACTCGACATTAGAGAGCGTGGCGAACGGAGTCCCGCTCATCGTATGGCCGTTGTACGCAGAG CAAAAGATGAACGCAGTGATGTTAACAGAGGATATTAAGGTGGCATTAAGGCCTAAAAGGGTGGGGAGCAGAGTGATCGGAAGGGAAGAGATAGGGAACA CGGTGAGGAGTTTAATGGAAGGCGAAGAAGGAAAGAAAGTTCGTTATCGGATGAAGGAATTGAAAGACGCTGCAAAAAAGGTTCTGAGCAAAGATGGCTC GTCTAGTAGGGCGTTGTCCGAAGTGGTTCAAAAGTGGAAGGACCAAAAAGTGTAA
AA sequence Show only first row Show all	>Lus10005950 pacid=23146047 polypeptide=Lus10005950 locus=Lus10005950.g ID=Lus10005950.BGIv1.0 annot-version=v1.0 MADNNTQTPHIAILPSPGMGHLIPLVELTKRLVTCHNLNVTFIIPTSTDAPPSAAMKSVLDSLPSASVDSIFLPPVSLHDVVFNSSASDAKIETIIPLPA AQSLPPLRDAFRSIATSGRRRLSALVVDLFGTDAFDVAAEFGAASYVFYPSTAMALSLFLYLPTLDAEVTGAYSDLDEPVQIPGCIPVNGTDLLDPVQDR NNDAYSWLLHHAKRYRLADGVMVNSFPELEPGAIKSLQKTEDQLGKKPMVYPVGPLVNMDSSKKTGSECLDWLDVQPSGSVLFVSFGSGGTLSYDQINEL AFGLEMSEQRFIWVVRSPDDKTANASFFTVQSQNDPFHFLPKGFLDRTRERGLVVSSWAPQAQILSHNSTGGFLTHCGWNSTLESVANGVPLIVWPLYAE QKMNAVMLTEDIKVALRPKRVGSRVIGREEIGNTVRSLMEGEEGKKVRYRMKELKDAAKKVLSKDGSSSRALSEVVQKWKDQKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005950 [exp]	0	1
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10009396 [exp]	2.0	0.9668
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10040416 [exp]	4.0	0.9664
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10035011 [exp]	7.7	0.9526
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10005670 [exp]	8.1	0.9432
AT1G72220			RING/U-box superfamily protein...		Lus10015901 [exp]	8.4	0.9520
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10032929 [exp]	9.6	0.9605
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10015576 [exp]	11.0	0.9595
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10020549 [exp]	12.2	0.9557
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026097 [exp]	13.1	0.9468
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10035681 [exp]	13.3	0.9308

Compare expression of checked genes

Lus10005950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.