Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01070 479 / 9e-167 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 475 / 3e-165 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 429 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) AT3G50740 315 / 1e-102 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT2G18570 305 / 7e-99 UDP-Glycosyltransferase superfamily protein (.1) AT5G26310 303 / 4e-98 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT5G66690 301 / 3e-97 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 255 / 1e-79 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3) AT2G18560 251 / 3e-79 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 252 / 1e-78 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029453 [exp] 873 / 0 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029452 [exp] 487 / 9e-170 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 485 / 5e-169 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10039588 [exp] 421 / 4e-144 AT4G01070 419 / 2e-143 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001906 [exp] 369 / 1e-123 AT4G01070 431 / 1e-147 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003900 [exp] 355 / 6e-118 AT4G01070 411 / 4e-140 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001905 [exp] 352 / 5e-117 AT1G01420 391 / 3e-132 UDP-glucosyl transferase 72B3 (.1) Lus10003944 [exp] 335 / 2e-110 AT4G01070 400 / 1e-135 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10041713 [exp] 325 / 4e-106 AT2G18570 415 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G096000 [exp] 526 / 0 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096100 [exp] 520 / 0 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G168600 [exp] 499 / 5e-175 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.003G138200 [exp] 465 / 4e-161 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041800 [exp] 363 / 2e-121 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G030500 [exp] 343 / 1e-113 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G030300 [exp] 316 / 4e-103 AT3G50740 496 / 1e-173 UDP-glucosyl transferase 72E1 (.1) Potri.007G030400 [exp] 316 / 4e-103 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.007G029800 [exp] 308 / 4e-100 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1) Potri.014G041900 [exp] 280 / 1e-89 AT4G01070 295 / 2e-95 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10005951 pacid=23146057 polypeptide=Lus10005951 locus=Lus10005951.g ID=Lus10005951.BGIv1.0 annot-version=v1.0 ATGTCGTCGCAGCAGAAACCTCACGTAGTCATCTTCCCATCTCCAGGAATGGGCCATCTCATCCCGTTCGTCGAGCTCTCCAAGAAGCTGGTCCTCTCCC ACAACTTATCCGTCACAGTCATGATCCCATCCCTGGGCCCACCTTCCAAGGCTCAAGCCCAATTCCTTGATTCCCTCCCGGACGGTTTGATCAACCACAT CGCTCTCCCTCCGGCTAATCGGGCCGATTTCCCGGCCGATGCTCAAGCCGAGACTTTACTCTGCCTAACTGTCGCCCACGCCATCCCTTCCCTTCGCGAC GCACTCAAGTCCTTCGTTGAGAAGGGAAAGCGACCTGTGGCGCTGATTGTTGATTTGTTTTGTACGGATGCATTCGACGTGGCTAGTGAATTTGGAGTGC CCGGTTATGTAGCCATGCTCTCGAATGCAATGTTGATGTCGATGGTGGCTCACTTGCCTAAGTTGGACGAGGAGGTGGTCGGGGAGTACACTGACATGAA GGAACCGATTTTGTTTCCGGGTTGTCGGGTTGCTATCCATGGTTCGGAGCTGCCTAGCCCGGCTTTGAACAGAAAGAACGACGGCTACAAATGGTTCCTT CACAACGTCAAGCATATGGATCTTGCTGAGGGGGTTTTGATAAACAGCTTTACCGATTTGGAAGGAGAAACCATTCGATTTCTCCAAAAGAATATGAACA AACCGATCTATCCGATTGGACCGATAATCCAATCGGGTGATAGTTCAATCACGGATCCGAGCGGGTGCATAAAGTGGCTAGACCACCAGCCAGATGGGTC GGTCTTGTTGGTTTCATTTGGGAGCGGTGGGACCCTCTCATCAGCCCAACTAACTGAACTAGCACTCGGTTTGGAGGCTAGCCAAAAGAGGTTCATTTGG GTTGTGAGGAGTCCAAACGATGCCGCCTCTAATGCCTCATATTTCAGCGGTAGGAGCAGTTCGAACCCGTTCGATTTCCTGCCAGAAGGCTTTGTGGACC GGACCAAAGATCGCGGCCTAGTTGTCCCTTCGTGGGCCCCACAAATGCAGGTGCTTAGCCACCTGGCGACAGGAGGGTTCATGAGCCATTGCGGATGGAA CTCGACATTAGAGAGCTTAATGAATGGTGTGCCAATGATTGCTTGGCCGTTGTATGCCGAACAGAAAATGAATGCCGTGTTACTAGAGAAGGACTTTGGA GTTGCGTTACGGCCAATTGCAAGGGAAGATGGGGTGATCGGAAGGGAAGAGATCTCGGAGGTTGTTAAGGAACTCATGGAAGGTGGTGACCAAGGGGCGG CTGTTCGGAAGAGGATGGAGAAGCTTAAATTGGCGGCGGCTGAGGCCGTCGGCGATGAAGGGTCTTCGACAAAGTCTCTTGCAGAGTTGGTGGCTAAGTG GACAAAAGGCATAAATAATTAG
AA sequence Show only first row Show all	>Lus10005951 pacid=23146057 polypeptide=Lus10005951 locus=Lus10005951.g ID=Lus10005951.BGIv1.0 annot-version=v1.0 MSSQQKPHVVIFPSPGMGHLIPFVELSKKLVLSHNLSVTVMIPSLGPPSKAQAQFLDSLPDGLINHIALPPANRADFPADAQAETLLCLTVAHAIPSLRD ALKSFVEKGKRPVALIVDLFCTDAFDVASEFGVPGYVAMLSNAMLMSMVAHLPKLDEEVVGEYTDMKEPILFPGCRVAIHGSELPSPALNRKNDGYKWFL HNVKHMDLAEGVLINSFTDLEGETIRFLQKNMNKPIYPIGPIIQSGDSSITDPSGCIKWLDHQPDGSVLLVSFGSGGTLSSAQLTELALGLEASQKRFIW VVRSPNDAASNASYFSGRSSSNPFDFLPEGFVDRTKDRGLVVPSWAPQMQVLSHLATGGFMSHCGWNSTLESLMNGVPMIAWPLYAEQKMNAVLLEKDFG VALRPIAREDGVIGREEISEVVKELMEGGDQGAAVRKRMEKLKLAAAEAVGDEGSSTKSLAELVAKWTKGINN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005951 [exp]	0	1
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10025706 [exp]	1.0	0.9905
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	1.4	0.9844
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Lus10030362 [exp]	1.7	0.9776
AT5G65380			MATE efflux family protein (.1...		Lus10002645 [exp]	3.2	0.9727
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	3.5	0.9757
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026178 [exp]	4.2	0.9685
AT1G47530			MATE efflux family protein (.1...		Lus10042130 [exp]	6.3	0.9627
AT5G06740			Concanavalin A-like lectin pro...		Lus10016257 [exp]	6.5	0.9550
AT5G39220			alpha/beta-Hydrolases superfam...		Lus10032977 [exp]	6.8	0.9433
AT4G27290			S-locus lectin protein kinase ...		Lus10038552 [exp]	7.5	0.9656

Compare expression of checked genes

Lus10005951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.