Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01430 464 / 5e-163 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT4G01080 450 / 1e-157 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1) AT4G23790 424 / 2e-147 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT4G11090 423 / 2e-147 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT5G15890 344 / 4e-115 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT1G70230 340 / 9e-115 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT5G15900 318 / 2e-106 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT3G28150 309 / 7e-103 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT5G51640 254 / 2e-80 TBL17, YLS7 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) AT4G25360 231 / 3e-71 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029454 [exp] 727 / 0 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10032367 [exp] 436 / 1e-151 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10033950 [exp] 436 / 2e-151 AT4G11090 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10034087 [exp] 336 / 5e-113 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1) Lus10003061 [exp] 335 / 8e-113 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10010704 [exp] 321 / 5e-107 AT1G70230 459 / 2e-160 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10029188 [exp] 319 / 5e-106 AT1G70230 461 / 5e-161 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10039438 [exp] 297 / 6e-98 AT3G28150 431 / 8e-150 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Lus10039476 [exp] 296 / 2e-97 AT3G28150 428 / 1e-148 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G168400 [exp] 559 / 0 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.014G095800 [exp] 545 / 0 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.001G093800 [exp] 469 / 4e-165 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.003G137800 [exp] 468 / 2e-164 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.004G105700 [exp] 347 / 3e-117 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.008G146100 [exp] 340 / 8e-115 AT1G70230 494 / 2e-174 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Potri.010G095700 [exp] 328 / 3e-110 AT1G70230 481 / 2e-169 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Potri.017G110200 [exp] 313 / 4e-104 AT5G15900 419 / 2e-144 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105500 [exp] 311 / 1e-103 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.017G073700 [exp] 309 / 1e-102 AT3G28150 442 / 3e-154 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10005952 pacid=23146070 polypeptide=Lus10005952 locus=Lus10005952.g ID=Lus10005952.BGIv1.0 annot-version=v1.0 ATGCTCTGGTTTTTCGTCTTTCTTACTAAAATTAATGGCGAGCTGTCAGAGAAGTGCGATTTGTTCGCCGGAGAATGGGTGCGGGACCCATCGGGTCCGT TCTACACGAACCGGAGTTGTCACGAGATACAAGATCATCAGAACTGCATGAGAAATGGACGGCCCGATTCAGAGTATCTCTACTGGAGATGGCGTCCCAG TGGCTGTGATTTGCCCAAGTTCAATCCGAGCAAGTTTCTCAAGCTGATGAGGAACAAATCCATGGCGTTCATTGGAGATTCTATCTCCAGGAACCATGTT CAGTCCTTGCTCTGCATTCTCTCCCAGGTGGAAGATGGAGTGGAAGTGTACCGTGACAAAGAGGACAAATCCAAAAGATGGCTGTTCCGATCTCACAACT TCACCCTCTCGGTTATTTGGTCTCCATTCCTGATCAAATCCGAGATCTTCGAGGACAACAACGGCATCTCCTCAAAAGAAATCCAGCTCCACCTCGACGA GCTTGATCCCAAATGGACGGAGCAATACGAGAGCTTCGACTACGTGGTGATTGCAGCAGGGAAGTGGTTCCTGAAGACCGCAGTGTACCACGAAAACAAC GAGGTCGCAGGGTGCCATTACTGCCCCGGGATGAACCTCACCGAGCTGGGACACGACTACGCATACCGCAGAGCGATATCCCTCGCTCTCAATTTTGCGG CCAAGCAAAGGGCGTCGCTGTTCTTGCGAACAACCACACCAGACCACTTCGAGAACGGAGAATGGTTCAGTGGAGGGACCTGCAATCGAACGGTACCGTT CAAACGAGACGAGGTCGATATCGGAGAATTGGATAGACAGATGAGAGACATTGAGCTGGAGGAATTCGCGAAGGCGATAGCTGGAGAATTGGGGAATCGA GCAGTTCTGAAGCTGCTAGATACAACAAGGCTATCAGTGTTGAGACCAGATGGACACCCTGGACCGTATATGCATTCTCAGCCTTTTGCAAACAAAGATG AGAAAGTTCAAAATGATTGCTTGCATTGGTGCTTGCCAGGGCCGATAGATTCATGGAATGATTTGGTGATGCAGATGATTGTAAATGGCTATAGATGA
AA sequence Show only first row Show all	>Lus10005952 pacid=23146070 polypeptide=Lus10005952 locus=Lus10005952.g ID=Lus10005952.BGIv1.0 annot-version=v1.0 MLWFFVFLTKINGELSEKCDLFAGEWVRDPSGPFYTNRSCHEIQDHQNCMRNGRPDSEYLYWRWRPSGCDLPKFNPSKFLKLMRNKSMAFIGDSISRNHV QSLLCILSQVEDGVEVYRDKEDKSKRWLFRSHNFTLSVIWSPFLIKSEIFEDNNGISSKEIQLHLDELDPKWTEQYESFDYVVIAAGKWFLKTAVYHENN EVAGCHYCPGMNLTELGHDYAYRRAISLALNFAAKQRASLFLRTTTPDHFENGEWFSGGTCNRTVPFKRDEVDIGELDRQMRDIELEEFAKAIAGELGNR AVLKLLDTTRLSVLRPDGHPGPYMHSQPFANKDEKVQNDCLHWCLPGPIDSWNDLVMQMIVNGYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10005952 [exp]	0	1
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10029454 [exp]	1.0	0.9217
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034655 [exp]	2.2	0.8475
AT1G77580			Plant protein of unknown funct...		Lus10010888 [exp]	2.4	0.8789
AT1G30630			Coatomer epsilon subunit (.1)		Lus10023385 [exp]	14.1	0.8121
AT5G62930			SGNH hydrolase-type esterase s...		Lus10027675 [exp]	14.4	0.7890
AT3G53010			Domain of unknown function (DU...		Lus10001129 [exp]	15.2	0.8615
AT4G38040			Exostosin family protein (.1)		Lus10002664 [exp]	15.3	0.8436
AT5G27490			Integral membrane Yip1 family ...		Lus10015189 [exp]	19.7	0.8306
AT5G42660			Protein of unknown function (D...		Lus10032311 [exp]	20.1	0.8246
AT3G03210			unknown protein		Lus10010965 [exp]	20.5	0.8333

Compare expression of checked genes

Lus10005952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.