Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04020 89 / 9e-20 unknown protein AT5G17600 87 / 7e-19 RING/U-box superfamily protein (.1) AT5G10380 82 / 2e-17 ATRING1, RING1 RING/U-box superfamily protein (.1) AT4G17905 82 / 2e-17 ATL4H RING/U-box superfamily protein (.1) AT3G18930 83 / 3e-17 RING/U-box superfamily protein (.1.2) AT3G03550 81 / 9e-17 RING/U-box superfamily protein (.1) AT5G05810 80 / 2e-16 ATL43 RING/U-box superfamily protein (.1) AT2G34990 79 / 2e-16 RING/U-box superfamily protein (.1) AT4G09120 79 / 3e-16 RING/U-box superfamily protein (.1) AT2G20030 79 / 4e-16 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029456 [exp] 230 / 4e-76 AT5G10380 86 / 3e-21 RING/U-box superfamily protein (.1) Lus10029457 [exp] 111 / 4e-27 AT3G04020 129 / 4e-34 unknown protein Lus10006493 [exp] 86 / 1e-18 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10025338 [exp] 83 / 1e-18 AT4G17905 99 / 4e-25 RING/U-box superfamily protein (.1) Lus10012745 [exp] 84 / 5e-18 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10013618 [exp] 83 / 1e-17 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10023617 [exp] 83 / 2e-17 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10024405 [exp] 80 / 2e-17 AT4G17905 95 / 9e-24 RING/U-box superfamily protein (.1) Lus10031515 [exp] 80 / 1e-16 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G206200 [exp] 163 / 4e-49 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1) Potri.008G054200 [exp] 137 / 5e-39 AT1G20823 80 / 6e-19 RING/U-box superfamily protein (.1) Potri.010G205900 [exp] 132 / 2e-35 AT3G04020 321 / 6e-110 unknown protein Potri.006G144200 [exp] 92 / 1e-21 AT5G17600 90 / 3e-21 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 86 / 2e-18 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 85 / 4e-18 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.005G099000 [exp] 82 / 4e-18 AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1) Potri.010G010500 [exp] 84 / 5e-18 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.001G141200 [exp] 84 / 7e-18 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 84 / 1e-17 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10005954 pacid=23146068 polypeptide=Lus10005954 locus=Lus10005954.g ID=Lus10005954.BGIv1.0 annot-version=v1.0 ATGTCATCCGCCGGCGCCGGAACAAACGGCAACAACAGTAACGACGACTTCAACACCAAGATCGCAATCCTCCTAGTCGGAGTCGGGTCCGCCGCCCTCG TCGTCACAATCTACCACTGCATAGCCGTCGGGTGGTGCAACCGGAACAACTGGGGCAGGGGCGGCGCTGGGCAGGGGAACCGTCACGGAGCCGCGGGGGG GACGCGGCGGCAGCAGCGAAGGTTCGTGACGGAGGTTCTAGAAGGGCACAGCAGCATGGAGAGCTCGACTGCGGAGCTGATTCCGGCGTACAAGTTCTAC AAAGGGATGGGGCTTATGAAGGAAGACGGCGGGACCTGTGCGATCTGCCTCTGTGAGTTCGAGGAAGGAGAAGAGTTGAAGACTCTGCCAGAGTGTATGC ACTCTTTCCACGTGGGATGTATCGATATGTGGCTGTATTCTCACTCCAATTGTCCGATGTGCCGGACCGACGCTGCGCCATCGCCTCAGGTGTCTTTCCA GGCCGGCGACGTGATGGAGGTGGAACAGAGCCTAGGGGTTACGTTGCAGGGTATAATTGTACATTCGCGGACGAACCAAGTATACTGGCATCAAACTGAC AAGCTAACCTCCATACAATCAAAGCATATGCAAAGGGAAGGGTTCTCACTTTCTCCGAGATTGAGTTGTGTGAAACAAAACAATACAATCATTGATGAGC GTAGCTCATTTTCAGTCGCTAGTTCCTTCCCAGGTCCCTTGGAGAAGTTACTTAAATTGACAGCTAAGTTACCAACACAGATTGCTCTAACTGGAGACAT TTTAGCATTAAACGAAGAGAAGGCACAGTTGGTCGTTGGAAACCATAAAGAGATTATTGAGCATGAAGAGAGAGTGATTAGCGACGCAAGCTACACGGTA TCTGGTGTCTTAAATTCTTCAAATTCTGTTGGTGCATCAGGAAGTGAAAGCCTCAAGGAGCTATTAGATGAACACGATCAGTACCAGATCTATAGGTTCA GCAAGAGTTCATGCGTGTACGTTGATGGCAATGGAGGTACGCATGAAGTTGATGCCGAAGATATTGAAAAGTCCAAAGCAGATCTGTTGGATAAGGCTGT TATTTGA
AA sequence Show only first row Show all	>Lus10005954 pacid=23146068 polypeptide=Lus10005954 locus=Lus10005954.g ID=Lus10005954.BGIv1.0 annot-version=v1.0 MSSAGAGTNGNNSNDDFNTKIAILLVGVGSAALVVTIYHCIAVGWCNRNNWGRGGAGQGNRHGAAGGTRRQQRRFVTEVLEGHSSMESSTAELIPAYKFY KGMGLMKEDGGTCAICLCEFEEGEELKTLPECMHSFHVGCIDMWLYSHSNCPMCRTDAAPSPQVSFQAGDVMEVEQSLGVTLQGIIVHSRTNQVYWHQTD KLTSIQSKHMQREGFSLSPRLSCVKQNNTIIDERSSFSVASSFPGPLEKLLKLTAKLPTQIALTGDILALNEEKAQLVVGNHKEIIEHEERVISDASYTV SGVLNSSNSVGASGSESLKELLDEHDQYQIYRFSKSSCVYVDGNGGTHEVDAEDIEKSKADLLDKAVI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04020			unknown protein		Lus10005954 [exp]	0	1
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010105 [exp]	9.6	0.6575
AT5G01740			Nuclear transport factor 2 (NT...		Lus10001261 [exp]	11.4	0.6329
AT5G01740			Nuclear transport factor 2 (NT...		Lus10029439 [exp]	13.5	0.6679
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041033 [exp]	17.0	0.6095
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030440 [exp]	20.8	0.6302
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10014041 [exp]	21.5	0.6196
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041034 [exp]	29.4	0.6002
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10027216 [exp]	42.7	0.5722
					Lus10001343 [exp]	44.5	0.6090
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10005651 [exp]	49.5	0.6091

Compare expression of checked genes

Lus10005954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.