Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17930 66 / 6e-12 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 62 / 2e-10 hydrolases;protein serine/threonine phosphatases (.1) AT2G04865 56 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1) AT2G25010 53 / 2e-07 Aminotransferase-like, plant mobile domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004830 [exp] 424 / 6e-151 AT1G17930 48 / 4e-06 Aminotransferase-like, plant mobile domain family protein (.1) Lus10039393 [exp] 425 / 1e-150 AT1G17930 73 / 3e-14 Aminotransferase-like, plant mobile domain family protein (.1) Lus10018964 [exp] 342 / 3e-119 ND / Lus10005495 [exp] 339 / 9e-118 AT1G17930 54 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10025363 [exp] 325 / 8e-113 ND 39 / 0.002 Lus10033313 [exp] 320 / 2e-108 AT1G17930 72 / 1e-13 Aminotransferase-like, plant mobile domain family protein (.1) Lus10022091 [exp] 326 / 2e-103 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10008249 [exp] 285 / 3e-97 ND 40 / 3e-04 Lus10007688 [exp] 280 / 3e-95 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10005957 pacid=23146064 polypeptide=Lus10005957 locus=Lus10005957.g ID=Lus10005957.BGIv1.0 annot-version=v1.0 ATGTTGGCACTGGCGAGCGGTTTAGTGGATGAGGATGCATACAGGGTCTTCATGTTTTGTCTGCTGGGGTCGACTCTCTTCACTGATAAGACCGCCGATC GTACACGTCTGGTGCTTTGGGAGTATTTTATTGGGGGCGTGTCCACGGTTTCGAGATATGCTTGGGGGACAGGGGCTCTGGCATGGTTGTACCACGAGCT GGGTAAGGCGAGCAGGGCTAAGTGTAAGGGGATGGTGGGGTCCGTGTCCCTACTTCAGTCCTGGATTCACGAGTACTTCCCTAGTACTCGTGCTGCTAGA GTAGCGGCTCGACAGCGGGGTGATACCGAGGCGTTGGTTGGGCGGTGGAGCAGTATCGAGCAGCCGGATAGATCATACGACTTCTTGCATCGTCGTCTTG AGTACTACCGACGTCTGCTGGGTGTAATGACCGATGAGGTTTTGATTTGGCTGCCATTTGGGCCACGCCCCGAGGTGGAGGTTCCCGATTCGACGTTCCG TGGGGTCATTCGTTTCGGTCCGACGGCAGAGTGCTATGCCCCGACACGCGTCGTTAGACAGTACGGCTGCGCGCAGATGATTCCGGGCCTCATCCCGTTG CCTTCCAGGGCTTACAGGGCTGCTGAGCCCAACGGGTACACAGTTGAGTGGGCTGACACCACAGATAGAGCGTGGAGGGACGGGGACTGGTCCAGGCTGA TGCCATTTCAGTCTTTGTTTAGACGTGCAGAGGATGTGACCGAGGTCGACCCCCGACACATGTACTGGTATCGGCGCCACACCCACCCGCGCATCCTCAG ACCCATCCCTACTGGTGTCACGGCCCCGACAGATATGCTAGCTTACAGGGTGTTGGATCATATGCATCCATTCCTTACTGGGACGATGAGACAGGAGTAC GAGTCTGATGCTGAGTACCTAGAGGCGGTCGAGCATATGAGATGCAGTGTTGCTGGCATGTACGTGGACTTCCGACACCAGAGACCGTACCGTTAG
AA sequence Show only first row Show all	>Lus10005957 pacid=23146064 polypeptide=Lus10005957 locus=Lus10005957.g ID=Lus10005957.BGIv1.0 annot-version=v1.0 MLALASGLVDEDAYRVFMFCLLGSTLFTDKTADRTRLVLWEYFIGGVSTVSRYAWGTGALAWLYHELGKASRAKCKGMVGSVSLLQSWIHEYFPSTRAAR VAARQRGDTEALVGRWSSIEQPDRSYDFLHRRLEYYRRLLGVMTDEVLIWLPFGPRPEVEVPDSTFRGVIRFGPTAECYAPTRVVRQYGCAQMIPGLIPL PSRAYRAAEPNGYTVEWADTTDRAWRDGDWSRLMPFQSLFRRAEDVTEVDPRHMYWYRRHTHPRILRPIPTGVTAPTDMLAYRVLDHMHPFLTGTMRQEY ESDAEYLEAVEHMRCSVAGMYVDFRHQRPYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48120			hydrolases;protein serine/thre...		Lus10005957 [exp]	0	1
AT2G42000		AtMT4a	Arabidopsis thaliana metalloth...		Lus10022998 [exp]	2.2	0.8037
					Lus10033891 [exp]	2.8	0.7558
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010863 [exp]	3.2	0.7695
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10036660 [exp]	7.3	0.7226
AT3G51810		AT3, GEA1, ATEM...	GUANINE NUCLEOTIDE EXCHANGE FA...		Lus10027816 [exp]	8.1	0.7012
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10015076 [exp]	8.8	0.7457
					Lus10022970 [exp]	12.6	0.7507
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10009278 [exp]	21.0	0.6919
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10000746 [exp]	24.0	0.6616
AT4G14746			unknown protein		Lus10035902 [exp]	26.7	0.7237

Compare expression of checked genes

Lus10005957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.