Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39580 520 / 2e-157 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029459 [exp] 2773 / 0 AT2G39580 746 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G052500 [exp] 1104 / 0 AT2G39580 818 / 0.0 unknown protein Potri.010G208200 [exp] 1042 / 0 AT2G39580 834 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10650 [flax] [poplar] zf-C3H1 Putative zinc-finger domain
Representative CDS sequence Show only first row Show all	>Lus10005958 pacid=23146031 polypeptide=Lus10005958 locus=Lus10005958.g ID=Lus10005958.BGIv1.0 annot-version=v1.0 ATGGGTCACGGCGTTGACGAGCTGAAAAAGTTGGCCCAGTTACCGGCGACTTCCAATCCCCCGGGAGCGTCGACGAACCCTAACTCATCACAGCAGTTTG CGCCCGCGAACCTCAGAGAAGATGGCGAACTCTCTTCTTCATTGGATGACGACGAAAATTGCACTTCCACGAAATTGGAGTCATCTGGTACCGATGACCC TTCAGCACCACATCAGCCGTGTTTGGTTGAGTCAACAAAGAAGTCTATGCAGCAGATACCAACAGTGAACGAAGCTTGTACAGCCAGTCCTGTGAACAAT ATTGAGTTATCAACCCGTGCATCAGCACAAGCAAAAAATGGCAAGAGTGCTGTGAAGAATAGGTTAGCAAGTAAATCATCTAATTCAGGACGGGAGGTTG CTTTAGCAGGCAATAACAATCTTGTGATAAGGTTCTCAGATGAGGATAGTGGCAGGGGGACTGAAGATTATACTAAAATGAAGGATTTGAGATCTAAGAT CAGGAAAACTGGACCAGACGGCAATAGAAAGTTGCTTTCCCATACATCAATACCCAAGACGTCGCAACATGCTGGAGCTAATGTTCGCAACATAATTCGC CACAAACCAACTCTAAGCCGGACATTTGTCTCACCAGCAAGCAATATCGTGAGAGGAATTAAATCCGGAGCTGGGACAGCTCAGACTGGACAATTATCAC GAGATAGAAGTTTCAGCAATAGCAACATAAGTACTCAAGGGAATACTTTTGAACTTGGCCTAGGCTTGAACCAAGCTAAACTTCATGACTTGAGGCAGCA GATTGCTATGCGGGAAAAGGAAATGAAGCTCAAGGCAGATCAGCAAAATAAGCTTTCTGCTTTAGTTTCTGCAAGAGAAAACAGTGCTAAGAACCTGTTG AAGAATGCTCCCGGGAAGTCAAAAATATGTCCTGATGCTGAACAAAAGGAACCTGTCAGAAAACGGCCAAAAGTGAGTGGGTCCTTTTCTAATCAGTTAA AGGCAGATTCTCAACAAGTAAATGTGCCTCCAAAGTCTATTCAACCATCAAATGGGGAGAATGCTGGGGTTGAACAACAGGACATTGTTAATTGCAGCAA TAATAGCAGTCCCAAGAGAAGAACAGATTCAGATGTCAGCAAATCACTACAGCAACACAATGCGCAGCAGTTCATTTTATCAGCAAATCCAGTCAGTACA AACATCGATAACATGCATGTAATGGCTACAAACATCGGTGTACAGGAAATTGTGGATAATGATCATCTGCTTAAAATCAGTCACCCCCTTGGTTCTTCAA AGATGGCGTTGAGTGAAAAACATACGTTCCACAAGCAAAGTGCTTCTGGTCACAACGTTGTGTCCCCCGTTGTAGAAAACATGTGCCAGAAGAACGCAAT TGAATTGGCTCTCGCTTATGTCATTTTTTCCTCTTTTTCCTTCGGGACTCCCATAATGTTTCAGGAGTCTTTGATAAATGCCAACTTCTCAAGTTATTTG GGAAATGTCTCAGAGAATTGTAACAGAAACTTGTGCTGCTTAGTTGAAATGGAGGAGAAATTGGACAAGGAGTTGGAAGAAGCACAAGGACTGAAATATA GATGTGAAATTGAAGAAAGAAATGCACTCAGAGCTTATAGGAGAGCTCAAAGGGCCTTGATTGAGGCTACTGCTAGATGTACCAGACTTTATCGCAAAAG GGAACTGCATTCTTCCCAATTTGGATCACTGATCATGAATGATCCCAGTTTGTTATTGTCTGCTGGGGAGCATGACCAATGTGGAATGGGTTCAAGTCCT GCACAAAAGGCATGTCAAAACATACTTCCAGTACCTTCATCAATTCATCAGAAGCAGCTGTTGGATGGGCTGAATTTGAGGTCAGAACCTTGCAGTGAGC CAGAGTTAAGCACGTCGGAGCCACTGAATCATGACTTCGTGAACACTGCAAGTCGACAGAGCTCTCCTACAAAAGATCCAAATGTTTCGTCAGATGAAGA TGAGGAGGTGTTTCCAACGGAGCATGACGTTGACCAATGCAGCAACATGCAACCAACATCACATACTTCCTGTGGACAGCTAAATGATTTGGATCGTCCT TCAGAGAAAGGCTTTTCCTTAAATGACTCCCAAGACCCATTGCTTCTTGAGGCATCGTTGAGGTCTAAACTCTATGCTCGGTACGGAGTGAGATCCTTAC CAAAGACTACTGTTTCATCACATTTAGAGTCTGCAGATGAAGTAGGAACCGAAAACGACAATGAGAGTGAAAGAACTCAGATGAGCAACATCAGTCTTCC TGTATCAGCTGCTGAAAGACGGCAAGAATGCGATCTCGAAGGTGAGGATAATCCAGCAAGAGTTATGTCAGAGCCACCTGCCCAGGATATGAACCTTGAA ACTCATTCCACTACTAATTCTGGTCAAATACAGTACACTAGCCGAGGCTATCAGTTGACTCCTAACATGTTGTCAACCCCTACAGTATGGAGAAGTGTGT TCGAGCGTTTGAAAGTTATGTCCTCCAGAACTTTGTTACCTGTGAAAGATATAAACAATCAGCAAAGCGACATGGAATTGAAGTATGTTGAAGATGATAA TGATGTTGAATCTAGCGAAATTCAGTACAGCAATTTAACTGCGAGTTCAATGGAGGAAAGCACTAAGGATATATGTGATATGGAAATTGGATCCTTTAGC AGCAATGCTGGAGTTGATCCATTCTGGCCTCTTTGTATGTATGAACTTAGAGGAAAATGCAACAACAGTGATTGTCCCTGGCAACATGTTGCAGTTTTCT CTGCTGGCATTAGAAAAAAGAATCAGCATGATGGTTCTCATGATCCTGATTGTTCTCCAGGATTACGAAGTGAAAGGACAGTAGCTGAACATCCAATTAG TGGTGGTATATTGTATTTGCCAACTTATTCGGTTGGTCCAGATGTCATTAAAGCTCGTACACATACATATGAACCCAGTGTAGCATGGAAACATGGAAAA TGCTGGCGCTGGCAGAAAAGCTTCAGTGCTTACTTAGCTATCTTCATTTTGCTCGTCAACGATTTGCCTGCAAATGAGCCTTTTTCATGTGGCAATGAAG GCCGAATGGAGGTGCACGGGAGTTGGAATGAGCAGTTGTCTTGCTTCCACAGTAGAACTGGACTAGCGAATTATGAGAATCAAGTGATACCTAGTATCAT GCAAGCCCTGGAAATGTCCCTTGCCCCTCTCTTCCAGGAGGTTAACAAAGTAGAGAATATGACGAAGTCTCTTTCTATGCTGTCAATGGCTATTGAATCT GATCCTACATCTGAAGTCGTGTGGATAACGTATCTCCTCGTGTACTATAGTAACATCAAGTCAATTGAGAAGAATGACATGTTCTCCTATGCGATGCTGG AATGTTTCTGCATGTCTGGAAATATTGATATGGCAGTGCAGAAAATATCTGGATTCTTCAGTTTGACAACTTACTCTGATGAACCTCGTTCTGCATTGCT CTCTGATATCCTCAAATGCCTGACAATTTCTGACAAATATATGTTCTGGATTTGTTGTGTGTACTTAGTTATTTACAGGAAGTTACCCGTTCCCGTGCTT CAGCAGTTTGAGTGTGAGAAAGATCTCTCTGCAATTGAGTGGTCACCTGTTGATTTAAAGGACGATGAGAAGCATAGAACCGTCGGGCTAGTTGAAATCA TGTTAGATTCTGCACTGCAGTTGTTTTCCAACAAAGAATCACTGGAGAGTGAAGCCAACAATAGGGGAGCTCAGTGTTTTGCCCTCAATCACATACGGTG TATGATGGCACTTGGTAGGTTAGTATGTTGTTGCACATTAGTGGATAAATATTTGACTGTGCTTCCACAGTGCTTGGAGTTGGTACTCGTAGCGGCACGA AGCCAAGCTGCTGATGTTGATAGTTTAAGGTTCGATTGGTTCGAGAATGCCCTCGCCAACTGGCCGAAAGAAGTGCCTGGAATCCTTGGTTTATGGAATC AGTATGTTGAATTTGCACGTGAGAGGCGAGGACCTGATCTTGCTAAGGAACTGCTTGTTTGTTGGTTCAACTCCATATCAGAACTTAGATATAGGGACAG CACTCCAGTTGGATCGTTGGAGTTGGCATCAGTTTCAAATCCAGAATTTCTGATGCCTTATTCTAATAAAATGGACATAATGTTTGGATTCCTCAACGTC TGCCTCGCTAAAATGTTGCAAAATGATCGTACTGGGGCACTTGCTGCCATCGACAGTGCCCCCGACAGGGCTTTGAAGAGTGCAACCCCATTCTTTTTTA AACATTGCTTGGTTGAGCATGCTACATGCTTGCTTAACCATGAACATGGGCGAACAAAGTATGCTCCTGTCAAGGACCGGCTGAAGATTTTGAAAGGTTA CTTGGATGATTCTGGAGCTCCGTTTGTATCTGAACCGTTGTCCAGGCGGTTCATCAAGAATGTTGGCAAGCCAAGAGTTGAGCAGCTTATCAGTAACATA CTGAGTCCAGTCTCATCTGTGTTTTCGCCCGTAAACTTGGTACTCAAGGCGTGGTATGGTCCACCCTTTGTACTGGAGAATATAGTCCATGCAATGGAGT TGGTTGACTTTGTTGAAGCGATATTGGAGATAGTGCCGTCTAATTACCCATTGGCATTCTGTCTCTCAATGTTGGCGGATACGGTATTTCAAGCTGTCCC AGTGGCACCTGAATATGTTTGGGTTGAGGCGGCGGAGATATTGTTAGAAACTAATGGCGCTGCTGATTTACTTTCAGAGAGGTTTTACAAGAGAGCTCTG TCAGTGTATCCATTTTCGAAGAAGCTTTAG
AA sequence Show only first row Show all	>Lus10005958 pacid=23146031 polypeptide=Lus10005958 locus=Lus10005958.g ID=Lus10005958.BGIv1.0 annot-version=v1.0 MGHGVDELKKLAQLPATSNPPGASTNPNSSQQFAPANLREDGELSSSLDDDENCTSTKLESSGTDDPSAPHQPCLVESTKKSMQQIPTVNEACTASPVNN IELSTRASAQAKNGKSAVKNRLASKSSNSGREVALAGNNNLVIRFSDEDSGRGTEDYTKMKDLRSKIRKTGPDGNRKLLSHTSIPKTSQHAGANVRNIIR HKPTLSRTFVSPASNIVRGIKSGAGTAQTGQLSRDRSFSNSNISTQGNTFELGLGLNQAKLHDLRQQIAMREKEMKLKADQQNKLSALVSARENSAKNLL KNAPGKSKICPDAEQKEPVRKRPKVSGSFSNQLKADSQQVNVPPKSIQPSNGENAGVEQQDIVNCSNNSSPKRRTDSDVSKSLQQHNAQQFILSANPVST NIDNMHVMATNIGVQEIVDNDHLLKISHPLGSSKMALSEKHTFHKQSASGHNVVSPVVENMCQKNAIELALAYVIFSSFSFGTPIMFQESLINANFSSYL GNVSENCNRNLCCLVEMEEKLDKELEEAQGLKYRCEIEERNALRAYRRAQRALIEATARCTRLYRKRELHSSQFGSLIMNDPSLLLSAGEHDQCGMGSSP AQKACQNILPVPSSIHQKQLLDGLNLRSEPCSEPELSTSEPLNHDFVNTASRQSSPTKDPNVSSDEDEEVFPTEHDVDQCSNMQPTSHTSCGQLNDLDRP SEKGFSLNDSQDPLLLEASLRSKLYARYGVRSLPKTTVSSHLESADEVGTENDNESERTQMSNISLPVSAAERRQECDLEGEDNPARVMSEPPAQDMNLE THSTTNSGQIQYTSRGYQLTPNMLSTPTVWRSVFERLKVMSSRTLLPVKDINNQQSDMELKYVEDDNDVESSEIQYSNLTASSMEESTKDICDMEIGSFS SNAGVDPFWPLCMYELRGKCNNSDCPWQHVAVFSAGIRKKNQHDGSHDPDCSPGLRSERTVAEHPISGGILYLPTYSVGPDVIKARTHTYEPSVAWKHGK CWRWQKSFSAYLAIFILLVNDLPANEPFSCGNEGRMEVHGSWNEQLSCFHSRTGLANYENQVIPSIMQALEMSLAPLFQEVNKVENMTKSLSMLSMAIES DPTSEVVWITYLLVYYSNIKSIEKNDMFSYAMLECFCMSGNIDMAVQKISGFFSLTTYSDEPRSALLSDILKCLTISDKYMFWICCVYLVIYRKLPVPVL QQFECEKDLSAIEWSPVDLKDDEKHRTVGLVEIMLDSALQLFSNKESLESEANNRGAQCFALNHIRCMMALGRLVCCCTLVDKYLTVLPQCLELVLVAAR SQAADVDSLRFDWFENALANWPKEVPGILGLWNQYVEFARERRGPDLAKELLVCWFNSISELRYRDSTPVGSLELASVSNPEFLMPYSNKMDIMFGFLNV CLAKMLQNDRTGALAAIDSAPDRALKSATPFFFKHCLVEHATCLLNHEHGRTKYAPVKDRLKILKGYLDDSGAPFVSEPLSRRFIKNVGKPRVEQLISNI LSPVSSVFSPVNLVLKAWYGPPFVLENIVHAMELVDFVEAILEIVPSNYPLAFCLSMLADTVFQAVPVAPEYVWVEAAEILLETNGAADLLSERFYKRAL SVYPFSKKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39580			unknown protein		Lus10005958 [exp]	0	1
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	1.4	0.8949
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10023746 [exp]	2.8	0.8766
AT1G70620			cyclin-related (.1.2.3)		Lus10000440 [exp]	5.3	0.8674
AT1G70620			cyclin-related (.1.2.3)		Lus10026699 [exp]	5.5	0.8528
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002051 [exp]	7.1	0.8366
AT5G39350			Tetratricopeptide repeat (TPR)...		Lus10008136 [exp]	7.5	0.8609
AT5G14520			pescadillo-related (.1)		Lus10001362 [exp]	9.8	0.8682
AT3G58530			RNI-like superfamily protein (...		Lus10015980 [exp]	11.6	0.8064
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10041229 [exp]	14.8	0.8518
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Lus10005004 [exp]	15.0	0.8372

Compare expression of checked genes

Lus10005958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.