Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21340 80 / 3e-17 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G31730 75 / 9e-17 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G20640 77 / 4e-16 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G05170 75 / 5e-16 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27660 77 / 7e-16 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G31050 76 / 1e-15 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 74 / 2e-15 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 71 / 3e-15 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G61660 74 / 5e-15 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G20100 67 / 8e-13 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029460 [exp] 378 / 4e-134 AT3G20640 71 / 3e-15 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023428 [exp] 110 / 2e-28 AT5G59890 244 / 4e-81 actin depolymerizing factor 4 (.1.2) Lus10025599 [exp] 76 / 4e-17 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10027064 [exp] 75 / 7e-17 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10038550 [exp] 79 / 2e-16 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007613 [exp] 77 / 2e-16 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013874 [exp] 77 / 3e-16 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024071 [exp] 74 / 3e-16 AT2G31730 116 / 3e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041649 [exp] 76 / 5e-16 AT2G31730 117 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G052000 [exp] 124 / 7e-34 AT1G27660 90 / 5e-20 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G208600 [exp] 101 / 1e-25 AT1G27660 90 / 3e-20 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G020200 [exp] 86 / 2e-19 AT1G27660 155 / 8e-43 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G098900 [exp] 84 / 2e-18 AT1G31050 209 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G142700 [exp] 81 / 2e-17 AT1G31050 176 / 9e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G126800 [exp] 76 / 5e-17 AT1G05710 192 / 4e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.001G410600 [exp] 79 / 7e-17 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G112000 [exp] 75 / 7e-17 AT1G05710 180 / 2e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.004G029100 [exp] 79 / 9e-17 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.005G119601 [exp] 78 / 2e-16 AT1G27660 145 / 2e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005959 pacid=23146054 polypeptide=Lus10005959 locus=Lus10005959.g ID=Lus10005959.BGIv1.0 annot-version=v1.0 ATGTTTCCAGGGGGCAGTAGTAATGAAGCACTGGTGATGCCAAGTTTGGACACCTCAATGCCAATGGACAACGCCAGAATTCTGAACCTTGACAGCTTCT GTTGGGACTCCAGCAATTTGATTACTAGCTACGATTCTCCTTTCGAAGGGCCCACTGGGTATGGATTGTATTCAAGCTGTGATACCTTTTCGAACCAGCT GAAGAATGTTTCTTGTCCTGCTCCGACTCCAGTGGCAGATAATTATGTGAGGGCTGTGCTTAGATTGATTGATCAAAGTTGTTCGCATAGTGGACAAGTG AGGAAACGAAGAATTGAAGTTAGCAGCATAGAATGCAAGGGTGGGAAGAGGAAGAAATCCAACACCATCACTACTTCTGAAAAGACACAGCAGTTTGTCG ACATCCAAGAATTCAAGATTGAAGTGCCCGCAAGGAGGAAACAGAAGTTAAGCGATAAAATCACAGCGCTGCAGAAGCTGGTGTCGCCATATGGCAAGAC GGATACTGCCTCAGTTCTACAACAGGCTTCTCTTTACATCAAGCTCCTCCACAAACAGCTCCAGATGCTGAGCCAGAGTGCCTCCGCTGCTGATGATTTA GAGACAGATGCATGGACAACCACAAACTCTGTGACCAATAGAGATGGACAGGTGGTGGTGGGGTTGAGAAGTAGAGGGCTTTGCTTGCTTCCTTTGTGTT TAGCAAACAAAGTAAACTCACTGAAATCAATCAATGACTTGAGTTGGTAA
AA sequence Show only first row Show all	>Lus10005959 pacid=23146054 polypeptide=Lus10005959 locus=Lus10005959.g ID=Lus10005959.BGIv1.0 annot-version=v1.0 MFPGGSSNEALVMPSLDTSMPMDNARILNLDSFCWDSSNLITSYDSPFEGPTGYGLYSSCDTFSNQLKNVSCPAPTPVADNYVRAVLRLIDQSCSHSGQV RKRRIEVSSIECKGGKRKKSNTITTSEKTQQFVDIQEFKIEVPARRKQKLSDKITALQKLVSPYGKTDTASVLQQASLYIKLLHKQLQMLSQSASAADDL ETDAWTTTNSVTNRDGQVVVGLRSRGLCLLPLCLANKVNSLKSINDLSW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21340	bHLH	bHLH103, B70	basic helix-loop-helix (bHLH) ...		Lus10005959 [exp]	0	1
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10030616 [exp]	5.1	0.9001
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012011 [exp]	8.2	0.9057
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10000469 [exp]	11.8	0.8881
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030590 [exp]	12.1	0.8947
AT1G21890			nodulin MtN21 /EamA-like trans...		Lus10021201 [exp]	12.7	0.8875
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10003642 [exp]	15.9	0.8676
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10033172 [exp]	19.7	0.8291
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	20.8	0.8938
AT4G38960	CO		B-box type zinc finger family ...		Lus10035472 [exp]	21.8	0.8331
AT1G18530			EF hand calcium-binding protei...		Lus10039961 [exp]	22.4	0.8275

Compare expression of checked genes

Lus10005959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.