Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55410 498 / 1e-170 2-oxoglutarate dehydrogenase, E1 component (.1) AT5G65750 488 / 8e-167 2-oxoglutarate dehydrogenase, E1 component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015205 [exp] 524 / 0 AT5G65750 1889 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10029462 [exp] 495 / 4e-170 AT5G65750 1755 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10031476 [exp] 360 / 3e-121 AT5G65750 856 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10029463 [exp] 323 / 1e-103 AT5G65750 1641 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G051600 [exp] 518 / 2e-178 AT3G55410 1907 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Potri.010G209000 [exp] 518 / 2e-178 AT5G65750 1908 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005961 pacid=23146058 polypeptide=Lus10005961 locus=Lus10005961.g ID=Lus10005961.BGIv1.0 annot-version=v1.0 ATGACGTGGTTTAGAGCTGGTTCTAGCATAGCAAAGCTTGCCGTTAGGAGGACTTTGTCTCAGGGTGGGTCTTACACCGCCAGAACGCGAGTGTTACCTG CTCAAAGTCGTTACTTTCATACCACTGTCTTTAGGCCAAAGGCACAGTCAGCACCTGTCCCCAGGCCTGTTCCTCTTTCTAAGCTCACTGATAGCTTCTT AGATGGAACTAGCAGTGTCTACTTAGAGGAGCTTCAACGTGCATGGGAAGCTGACCCTAATAGCGTGGATGAGTCATGGGACAACTTCTTCAGGAACTTT GTTGGTCAGGCTGCTACGTCTCCTGGCATTTCGGGTCAAACAATTCAGGAGAGTATGCGGTTGTTGCTTCTGGTTAGGGCATATCAGGTTAATGGCCACA TGAAAGCCAAGTTAGACCCTTTGGCCCTGGAAGAAAGAGAGGTCCCTGATGATCTAAATCCTGCTCTTTATGGCTTCTCAGAAGCAGATCTTGATAGGGA GTTCTTTTTAGGAGTTTGGAAGATGGCTGGTTTTTTATCTGAGAACCGCCCTGTACAGACCCTCAGGTCCATATTGACCAGGCTTGAGCAAGCTTATTGT GGGAGTATTGGATTTGAATACATGCACATTGCTGATAGGGAGAAATGCAACTGGCTAAGGGACAAGATTGAGACACCAACACCTATGCAATATAACCGTC AGCGCCGAGAGGTTATTCTTGATAGGCTCATATGGAGTACACAGTTCGAGAACTTCTTGGCCACTAAATGGACGACAGCCAAGAGATTTGGGCTTGAAGA GATTTGGGCTTGA
AA sequence Show only first row Show all	>Lus10005961 pacid=23146058 polypeptide=Lus10005961 locus=Lus10005961.g ID=Lus10005961.BGIv1.0 annot-version=v1.0 MTWFRAGSSIAKLAVRRTLSQGGSYTARTRVLPAQSRYFHTTVFRPKAQSAPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNF VGQAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLALEEREVPDDLNPALYGFSEADLDREFFLGVWKMAGFLSENRPVQTLRSILTRLEQAYC GSIGFEYMHIADREKCNWLRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEEIWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55410			2-oxoglutarate dehydrogenase, ...		Lus10005961 [exp]	0	1
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10013763 [exp]	1.0	0.9301
AT1G73180			Eukaryotic translation initiat...		Lus10004803 [exp]	2.0	0.9251
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029462 [exp]	3.7	0.9023
AT2G46520			cellular apoptosis susceptibil...		Lus10030241 [exp]	4.0	0.9210
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Lus10028296 [exp]	4.9	0.9071
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	5.5	0.9217
AT1G73930			unknown protein		Lus10032474 [exp]	5.5	0.9096
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031185 [exp]	8.5	0.9103
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10032320 [exp]	10.6	0.9004
AT3G08530			Clathrin, heavy chain (.1)		Lus10037845 [exp]	11.6	0.9185

Compare expression of checked genes

Lus10005961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.