Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65750 1405 / 0 2-oxoglutarate dehydrogenase, E1 component (.1) AT3G55410 1394 / 0 2-oxoglutarate dehydrogenase, E1 component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015205 [exp] 1544 / 0 AT5G65750 1889 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10029462 [exp] 1494 / 0 AT5G65750 1755 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10029463 [exp] 1302 / 0 AT5G65750 1641 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10031476 [exp] 941 / 0 AT5G65750 856 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10002678 [exp] 50 / 4e-06 AT1G01090 688 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209000 [exp] 1451 / 0 AT5G65750 1908 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Potri.008G051600 [exp] 1446 / 0 AT3G55410 1907 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain
Representative CDS sequence Show only first row Show all	>Lus10005962 pacid=23146039 polypeptide=Lus10005962 locus=Lus10005962.g ID=Lus10005962.BGIv1.0 annot-version=v1.0 ATGAAAGAGATGTTTGACAGGTCTGCAGATCTTGGGGTGGAGAGTATAGTTATTGGAATGCCACACAGAGGAAGACTGAATGTGCTGGGAAATGTCGTAA GAAAGCCTCTGCGTCAAATATTTAGTGAGTTTAGTGGTGGCACTAAGCCGGTAGACGAGGTTGGGCTCTACACAGGTACTGGTGATGTCAAGTATCACTT GGGAACCTCTTATGATCGTCCAACTAGAGGTGGAAAGAGAATACATTTGTCTTTGGTTGCTAATCCTAGTCATTTGGAAGCTGTGGATCCTGTTGTTGTT GGAAAGACTAGAGCTAAGCAGTATTTCTCAAATGATGCGGACAGGACAAAGAATATGGGAATATTGATTCATGGAGATGGTAGTTTTGCTGGACAGGGTG TGGTATATGAGACTCTGCATCTTAGTGCACTGCCAAATTACAGCACTGGTGGGACTATCCATATTGTGGTGAACAACCAAGTGGCTTTCACAACAGATCC TATGTCAGGCAGATCTTCACAGTATTGTACTGATGTTGCCAAGGCCTTGAATGCGCCAATCCTACATGTTAATGGAGACGATGTAGAGGCTGTCGTTCAT GCTTGTGAACTTGCAGCTGAATGGCGTCAGACTTTTCACTCCGATGTCGTTGTAGATCTAGTTTGTTATCGCCGTTTTGGCCATAATGAGATTGATGAGC CATCTTTCACGCAGCCCAAGATGTATCAGGTAATTCGGAGTCATCCCTCTGCTCTTCAGATTTATCAGAACAAACTTCTAGAATCTGGGCAGGTCAATCA AGAGGATATTAGCAAGATAACTGAGAAGGTCAGCACAATCCTGAATGAAGAGTTTTTGGCCAGTAAAGATTATGTTCCTAAAAGGAGAGACTGGCTTGCT TCTCATTGGACTGGGTTCAAGTCACCTGAGCAGATTTCACGTATCAGAAATACCGGGGTGAAACCTGAGATCTTGAAGAATGTCGGTAAAGCAATCACTG CTCTTCCAGAGACTTTTAAGCCTCACAGAGCTGTAAAGAAGGTATATGAGCAACGTGCACAAATGATAGAAACAGGAGAAGGCATTGACTGGGCTGTTGC AGAAGCCCTTGCTTTTGCTACATTACTGGTAGAGGGAAACCATGTTCGGTTGAGTGGTCAGGATGTTGAGAGAGGTACATTTAGTCATCGTCATTCCGTG CTTCATGATCAAGAAACTGGCGAGAAGTATTGCCCTCTGGACCATGTTGTTATGAACCAGGACGAGGAGATGTTCACTGTTAGTAACAGCTCTCTTTCCG AATTTGGTGTTCTTGGATTCGAGTTGGGTTATTCAATGGAAAGTCCAAACTCACTGGTCCTCTGGGAAGCCCAATTTGGTGATTTTTCCAACGGGGCTCA AGTGATCTTTGATCAGTTCTTGAGCAGCGGTGAGTCAAAATGGCTTCGTCAAACTGGTCTTGTTGTGCTTCTTCCTCATGGATACGATGGCCAGGGTCCT GAACACTCGAGTGCTCGGTTAGAGCGCTTTCTACAGATGAGTGATGACAATCCTTATGTGATTCCTGAGATGGACTCGACTATGCGTAAGCAAATTCAGG AATGCAACTGGCAGGTTGTGAATGTAACAACGCCTGCAAATTACTTCCATGTTTTGAGGAGACAGATACACAGAGAGTTTCGTAAGCCTCTCATTGTGAT GGCTCCCAAAAATCTACTTCGTCACAAGGAGTGCAAATCAAATCTCTCAGAGTTTGACGATGTCCAAGGCCACCCTGGATTTGACAAACAGGGTACAAGA TTTAAGCGTCTGATAAAAGATCAGAATGAACACTCTGATCTCGAGGAGGGCATGAGACGACTCGTTCTCTGCTCCGGAAAGGTGTATTATGAGCTTGATG AGGAGCGGAAGAAGACAGGTGCAAAGGATGTTGCTATCTGTAGGGTGGAACAATTGTGTCCTTTCCCATATAATCTTGTCCAGCGTGAGCTCAAGCGATA TCCAAATGCGGAAATTGTATGGTGCCAGGAGGAGCCAATGAACATGGGCGCATACAACTACGTAGCACCTCGGCTTTGCACAGCCATGAAGTCACTTAGC AGAGGGGCCATGGATGACATCAAGTATGTCGGTCGTGCACCCTCAGCTGCAACGGCCACTGGGTATGTCGGTCGTGCACCCTCAGCTGCAACGGCCACTG GGTTCTACCAAGTCCACGGGAGGGAACAGTCCGAGCTGGTGCACAAGGCTATCCAACCTGAACCAATCCAATCTCCCGCTGAAACCGTTTAA
AA sequence Show only first row Show all	>Lus10005962 pacid=23146039 polypeptide=Lus10005962 locus=Lus10005962.g ID=Lus10005962.BGIv1.0 annot-version=v1.0 MKEMFDRSADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVV GKTRAKQYFSNDADRTKNMGILIHGDGSFAGQGVVYETLHLSALPNYSTGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALNAPILHVNGDDVEAVVH ACELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRSHPSALQIYQNKLLESGQVNQEDISKITEKVSTILNEEFLASKDYVPKRRDWLA SHWTGFKSPEQISRIRNTGVKPEILKNVGKAITALPETFKPHRAVKKVYEQRAQMIETGEGIDWAVAEALAFATLLVEGNHVRLSGQDVERGTFSHRHSV LHDQETGEKYCPLDHVVMNQDEEMFTVSNSSLSEFGVLGFELGYSMESPNSLVLWEAQFGDFSNGAQVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQGP EHSSARLERFLQMSDDNPYVIPEMDSTMRKQIQECNWQVVNVTTPANYFHVLRRQIHREFRKPLIVMAPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTR FKRLIKDQNEHSDLEEGMRRLVLCSGKVYYELDEERKKTGAKDVAICRVEQLCPFPYNLVQRELKRYPNAEIVWCQEEPMNMGAYNYVAPRLCTAMKSLS RGAMDDIKYVGRAPSAATATGYVGRAPSAATATGFYQVHGREQSELVHKAIQPEPIQSPAETV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10005962 [exp]	0	1
AT2G05710		ACO3	aconitase 3 (.1)		Lus10027165 [exp]	2.4	0.9438
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	5.3	0.9435
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032632 [exp]	5.7	0.9266
AT3G52990			Pyruvate kinase family protein...		Lus10035581 [exp]	7.7	0.9373
AT1G70770			Protein of unknown function DU...		Lus10001593 [exp]	7.9	0.9403
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10026519 [exp]	8.2	0.9386
AT2G20420			ATP citrate lyase (ACL) family...		Lus10008238 [exp]	9.2	0.9318
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10041464 [exp]	11.6	0.9186
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Lus10013317 [exp]	14.4	0.8834
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10019401 [exp]	15.7	0.9026

Compare expression of checked genes

Lus10005962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.