Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13660 215 / 6e-60 unknown protein AT5G59830 186 / 6e-51 unknown protein AT3G53680 139 / 3e-33 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 137 / 1e-32 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 72 / 2e-12 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 71 / 6e-12 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003285 [exp] 463 / 2e-155 ND / Lus10024426 [exp] 234 / 7e-67 AT5G59830 231 / 1e-70 unknown protein Lus10024427 [exp] 228 / 6e-61 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2) Lus10025307 [exp] 218 / 1e-60 AT5G59830 238 / 6e-73 unknown protein Lus10005889 [exp] 175 / 9e-47 AT5G59830 278 / 2e-89 unknown protein Lus10040857 [exp] 174 / 9e-47 AT5G59830 262 / 2e-83 unknown protein Lus10025315 [exp] 136 / 2e-32 AT2G37520 845 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024419 [exp] 136 / 2e-32 AT2G37520 842 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10016160 [exp] 76 / 2e-13 AT2G37520 355 / 3e-106 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209300 [exp] 356 / 6e-110 AT5G13660 308 / 2e-97 unknown protein Potri.008G051300 [exp] 353 / 1e-108 AT5G13660 317 / 1e-100 unknown protein Potri.006G082800 [exp] 274 / 1e-80 AT5G13660 261 / 2e-80 unknown protein Potri.009G027800 [exp] 227 / 5e-65 AT5G59830 380 / 2e-129 unknown protein Potri.001G236000 [exp] 222 / 3e-63 AT5G59830 375 / 2e-127 unknown protein Potri.006G083600 [exp] 146 / 2e-35 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 76 / 2e-13 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G003900 [exp] 74 / 4e-13 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 72 / 2e-12 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.004G217600 [exp] 67 / 6e-11 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005963 pacid=23146037 polypeptide=Lus10005963 locus=Lus10005963.g ID=Lus10005963.BGIv1.0 annot-version=v1.0 ATGGATTCCTCTCACCCAGAACATCTTAGCAACAAGAAGCTAGCAACTGAAGCTGTTAAGAATAATACAGCTTTGAATTCTCCACATGGAAATGATTACC CTTGGCATAATGTTCCCAACTTCCAGCGGCTTTCAGAACAAACTCGTGCCCACCATTTCGGCTCTGAAAGAGTGCAGAAATCACAAGTGGTCGAACGGAC CCATCCATCTGCTGGGAGTGGAAGTATTATCATAGGGACAAAGGAACATGTCAGTGGATCATACATGGGTTTATCTGTAACTCATAATGTTGAAGATCAC TCAGGTTCCATTGACCTTGGCGGACTGAGAAAAGTGCCAGTCGTCAATCAAGTTACCGACTCCAACAAAGACTTCTGCACTTTGTTGAAGCATTCACGAA GCAGATCAAATATCAGTTCAATCCTGACAAACACTGCTTTGAATAGTAACTCCAATGTGAACACTATGTCTCTCGGACGCATATGCAGCCAGGGAGATGG AAACTTCATTTCCATGGGTCATAATCTCAACCAAGGATATGGAAACTTCATGCCAATGGCTGGTGGTTACAATTTTTTGTCCTTGGAGCAACCGAAGGGC TTGGCATACCCAGAGCTAGATAACTCCATGATGGCAATGCCTTCCCGAGCCTCTGTCGTTGGCTCAAATTATGCCAATCAAAATGTGGATTTCATGTCCA CCATTAATTTTAGCCGGAAGAGAGATGATAATCTCATATCCATGAATCCAACCTCTGAAAAGTTGGATTTCACCATCAACTCAAATGTTCCTACTCCAGA CAAAGGGGATGCTGGTATTCTATCTCTTGATCACAAATATGGCAAGAATGCTAATGGAAACACAATATCTTTAGGGGCATTGTGTGGGACTAAGATTAAT GCATCTGGTAATACTGTTGGTGGTTATGCCTTGTCATTTCCTGGATGTAGCTCAGGTCAACGCTCAACTGAAGTACAAAGCTTGAAGAATTTGGTGCAGT CAAATTCAGATACAGTGCCAGATAATACTCCAAATGCTAATATGATAACTAATGCAGCCCCAAAGAATAAGCAGTCAAAAATGAAGAAGGATCCATCAAA CAAATTCCCTGCCAATGTCAAGAGTTTGTTGTCAACTGGAATTCTTGACGACATTCCTGTGAAATATGTTTCCTGGTCAAGGGAGTTTTCTGAGAGGGGG AACTCTTGCGTTCCGGGAGACTCTGGTTCCCAAGCCAACCCTATAAGAAGAACGGAGCAAAAGCGTGGTCATCAGTTGTCTATGGATTCCTCTCACCCAG AACATCTTAGCAACAAGAAGCTAGCAACTGAAGCTGTTAAGAATAATACAGCTTTGAATTCTCCACATGGAAATGATTACCCTTGGCATAATGTTCCCAA CTTCCAGCGGCTTTCAGAACAAACTCGTGCCCACCATTTCGGCTCTGAAAGAGTGCAAAACTCACAAGTGGTCGAACGGAGCCATCCATCTGCTAGGACT GGAAGTATGATCATAGGGACAAAGGAACATGTCAGTGGATCATACATGGATTTATCTGTACCTCATAATATTGAAGATCATTCAGGTTCCATTGACCTTG GCGGACTGAGGAAAGTGCCAGTCGTCAATCAATTTACCGACTCCGACAAAAACTTCTTCACTTTGTTGAAGCATTTACACAGCGGATCAAATAACAGTTC AATCCTGACAAACACTGCTTTGAATAGTAACTCCAATGTGAACACTATGTCTCTCGGACGCATATGCAACCAGGGAGATGGAAACTTCATTTCCATGGGT CATAATCTCAACCAAGGAGATGGAAACTTCATGCCAATGTCTGGTGGTTACAATTTTTTATCCTTGGAGCAACCAAAGGGCTTGGCATACCTAGAGCTAG ATAACTCCATGATGGCAATGCCTTCCCGAGCCTCTGTCGTCGGCTCAAATTATGCCAATCAAAGTGTGGATTTCATGTCCACCATTAATTCTAGCCGGAA GAGAGATGATAATCTCATATCAACGAATCCAACCTATGAAAAGTTGGATTTCACCATTAACTCAACTGTTCCTACTCCAGACAAAGGGGACGGTGGTATT CTATCTCTTGGTCACAACTATGGCGAGAATGCTAATGGAAACACAATATCTTTAGGGGCATTGTGTGGGACTAAGATCAATGCCTCTGGTAATACTGTTG GTGGTTATGCCTTGTCATTTCCTGGATGTAGCTCAGATCAACGCTCAACTGAAGTACAAAGCTTGAAGAATTTGGTGCAGTCAAATCCAGATACAGTGCC AGATAATACTCCAAATGCTAATATGATAACTGATGCAGCCCCAAAGAATAAGCAACCAAAAATGAAGAAGGATGCATCAAACAACTTCCCTGCCAATGTT AAGAGTTTGTTGTCAACTGGAATTCTTGACGACATTCCTGTGAAATATGTTTCCTGGTCAAGGGAGAAAAGTCTAAAAGGTATAATCAAGGGAACAGGTT ATTTATGTGGCTGCAACGAATGTAACTATAGCAAGAATATAAATTCGTATGCGTTTGAGGGCCATGCTAACTGCAAGTCAAAGCACCCAAACAATAACAT TTATTTCAACAATGGGAAAACCATATATGCTGTTGTTCAAGAGTTAAAGAACACTCCTCGGGAGAAGCTGTTTGATGCTGTCCAGAGGGTGATTGGTTCG CAGATCAATCAAAAGAATTTTCTGTCATGGAAGGGTATCTTCCTGTACTCCACAAACTCCGCTTCTTCCTTTAGTGATGCCCCCACTGCATCCTATTCAC TCGGCAAGGGTTGCTCCACCCGCGAGACATTGGCATTGGCCCAATTTGGCCGGTCTATCTCTAGGCGGAGGAATTGGTTGAACGCCTCCTCTTCTCATGT CCACTTGCCCTGCATCTTGGTTCCTCACGGGTATTCGTTGTCTGCCCCTACCGGACCTGTACCCTATGATGACCTGGCGTGCCCTCATAGGGTCGTCCCT AGATCTTGCGCCTCGCTTGGTTCTGCTATGGTGGCGCATTTGGAAATCTCGAACCTAGTGATCTTCGAGCGCTACCAGCTCTATCCCTTGGTCCTTCAAT GTCAATTCCTCTGCCAGGTGTTGGAACTAGCTCTCCTCCCCTCGGCTTCCCGACCTCCGTTGGCTTTAGGCTCTGCCGCTCCTCCTACAGCTTGGGTGCC TTCGCAAGCTCCCCAACTTGAAATTAATGTGGATGGGGCGATCTTGGCCCTAAGGTTAGGAGGGGAGGGTTGGTGGTTTGTGATGCACGTGGAGTTCTTC TACAAGGCGTCCGATGGACATATCCAGGGCTCCTTGACTCTTATGTTTTGA
AA sequence Show only first row Show all	>Lus10005963 pacid=23146037 polypeptide=Lus10005963 locus=Lus10005963.g ID=Lus10005963.BGIv1.0 annot-version=v1.0 MDSSHPEHLSNKKLATEAVKNNTALNSPHGNDYPWHNVPNFQRLSEQTRAHHFGSERVQKSQVVERTHPSAGSGSIIIGTKEHVSGSYMGLSVTHNVEDH SGSIDLGGLRKVPVVNQVTDSNKDFCTLLKHSRSRSNISSILTNTALNSNSNVNTMSLGRICSQGDGNFISMGHNLNQGYGNFMPMAGGYNFLSLEQPKG LAYPELDNSMMAMPSRASVVGSNYANQNVDFMSTINFSRKRDDNLISMNPTSEKLDFTINSNVPTPDKGDAGILSLDHKYGKNANGNTISLGALCGTKIN ASGNTVGGYALSFPGCSSGQRSTEVQSLKNLVQSNSDTVPDNTPNANMITNAAPKNKQSKMKKDPSNKFPANVKSLLSTGILDDIPVKYVSWSREFSERG NSCVPGDSGSQANPIRRTEQKRGHQLSMDSSHPEHLSNKKLATEAVKNNTALNSPHGNDYPWHNVPNFQRLSEQTRAHHFGSERVQNSQVVERSHPSART GSMIIGTKEHVSGSYMDLSVPHNIEDHSGSIDLGGLRKVPVVNQFTDSDKNFFTLLKHLHSGSNNSSILTNTALNSNSNVNTMSLGRICNQGDGNFISMG HNLNQGDGNFMPMSGGYNFLSLEQPKGLAYLELDNSMMAMPSRASVVGSNYANQSVDFMSTINSSRKRDDNLISTNPTYEKLDFTINSTVPTPDKGDGGI LSLGHNYGENANGNTISLGALCGTKINASGNTVGGYALSFPGCSSDQRSTEVQSLKNLVQSNPDTVPDNTPNANMITDAAPKNKQPKMKKDASNNFPANV KSLLSTGILDDIPVKYVSWSREKSLKGIIKGTGYLCGCNECNYSKNINSYAFEGHANCKSKHPNNNIYFNNGKTIYAVVQELKNTPREKLFDAVQRVIGS QINQKNFLSWKGIFLYSTNSASSFSDAPTASYSLGKGCSTRETLALAQFGRSISRRRNWLNASSSHVHLPCILVPHGYSLSAPTGPVPYDDLACPHRVVP RSCASLGSAMVAHLEISNLVIFERYQLYPLVLQCQFLCQVLELALLPSASRPPLALGSAAPPTAWVPSQAPQLEINVDGAILALRLGGEGWWFVMHVEFF YKASDGHIQGSLTLMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13660			unknown protein		Lus10005963 [exp]	0	1
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	1.0	1.0000
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030409 [exp]	2.0	1.0000
AT5G20260			Exostosin family protein (.1)		Lus10039981 [exp]	2.4	1.0000
AT1G73700			MATE efflux family protein (.1...		Lus10042705 [exp]	2.8	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000683 [exp]	3.9	1.0000
AT4G38260			Protein of unknown function (D...		Lus10016023 [exp]	4.0	0.9994
					Lus10001790 [exp]	4.2	1.0000
AT2G40370		LAC5	laccase 5 (.1)		Lus10007532 [exp]	5.1	0.9661
					Lus10006164 [exp]	5.3	1.0000
AT4G02300			Plant invertase/pectin methyle...		Lus10001466 [exp]	5.7	0.9864

Compare expression of checked genes

Lus10005963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.