Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39510 427 / 1e-149 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 387 / 1e-133 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 322 / 1e-107 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 312 / 5e-104 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 308 / 1e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G13670 305 / 1e-101 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 289 / 6e-95 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37450 283 / 1e-93 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G44800 283 / 6e-93 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 270 / 1e-87 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029464 [exp] 689 / 0 AT2G39510 429 / 2e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 538 / 0 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 531 / 0 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 505 / 5e-180 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 504 / 2e-179 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040310 [exp] 429 / 6e-150 AT2G39510 430 / 1e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023431 [exp] 421 / 5e-147 AT2G39510 425 / 8e-149 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 381 / 6e-131 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10025308 [exp] 381 / 5e-126 AT2G37460 487 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209200 [exp] 473 / 3e-167 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 459 / 8e-162 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 376 / 8e-130 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051400 [exp] 347 / 8e-118 AT5G13670 405 / 4e-141 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 331 / 2e-111 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 329 / 1e-110 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 327 / 2e-109 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 316 / 2e-105 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 313 / 1e-104 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.003G192500 [exp] 307 / 1e-101 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10005964 pacid=23146050 polypeptide=Lus10005964 locus=Lus10005964.g ID=Lus10005964.BGIv1.0 annot-version=v1.0 ATGGAGTGGTGGTCATCAAAATCCTTCAACCAAGCAAAGCCATACCTTGCAGTGATCTTCATGCAATTTGTGTCAGCAGGGAGTTCCATCATCTCAAAGT TTGCTCTCAACCAAGGAATGAGCCAACATGTTTTTGTTGTCTATAGATATGCCATTGCCACTGCTGTTATCTCCCCCTTTGCCTTCTTTTTTGACAGGAA GGTAAGGCCAAAGATGACTTGGGGGATCTTCTTCAAGATAGCACTCCTTGCCTTATTGGAGCCAACCATTGATCAAAACTTGTACTACACTGCCATGAAG TACACAACAGCAACATTTGCAGCTTCAATGAACAGTATCCTCCCTGCATTTGCATTCCTCATGGCCTGGGGTTTGGGGCTCGAAAAAGTGGAGTTGAGGA AGCTTCAGAGTCAGGCAAAGATATTAGGAACAATTGTGACGGTGGGAGGTGCTATGTTGATGGCTGCAATTAAAGGGGCAAGGCTGGATTTGCCATGGAC GAAAGGAATTGGTGTTCATGCTGCAGCTGGTTCAGTAGTTGCAGTTGAACATCCGATCAAGGGTGCTGTAATGATAGGAATTGGATGCATTTGTTGGGCT GCTTTCGTCAATCTCCAGGCAATCACTCTGAAATCATACCCAGGGAAGCTGTCATTAACAGCACTGATATGCATGATGGGGACAATAGAGGGATCAGTTG TGGCTGTTGGAATGGAATGGGGGAACCCTTCTGCTTGGAGTATTGGTTTCGACACCAAGTTACTTGCTGCTTTTTACAGTGGGATAATGTCGTCAGGAAT ATTGTACTCGGTACAAGGGGTGGTGATGGAAAGCAAAGGACCGGTTTTCGTAACAGCTTTCGGCCCTTTAAGCATGGTGATTGTAGCGATCTTGGGTTCG ATTTTACTGTCTGAGATTCTGTACATGGGAAGGGTAGTGGGAGCGATGGTGATAGTGACAGGATTGTATATGGTGTTATGGGGGAAGTCGAGAGACGAGA AAGTTGTAAGCAATATAACAAGATCAAATGATAAAGTGACTAATACCCCATTAGCTGGTAATGTGGAAGCCACCACGAATATCCAAAAGAAAGAAAGCAA TGGTGGTGGTGGTGGGGAAGAAGAAGAGTTTGTTTCCATTGAGGTTTCCAAATCCTGA
AA sequence Show only first row Show all	>Lus10005964 pacid=23146050 polypeptide=Lus10005964 locus=Lus10005964.g ID=Lus10005964.BGIv1.0 annot-version=v1.0 MEWWSSKSFNQAKPYLAVIFMQFVSAGSSIISKFALNQGMSQHVFVVYRYAIATAVISPFAFFFDRKVRPKMTWGIFFKIALLALLEPTIDQNLYYTAMK YTTATFAASMNSILPAFAFLMAWGLGLEKVELRKLQSQAKILGTIVTVGGAMLMAAIKGARLDLPWTKGIGVHAAAGSVVAVEHPIKGAVMIGIGCICWA AFVNLQAITLKSYPGKLSLTALICMMGTIEGSVVAVGMEWGNPSAWSIGFDTKLLAAFYSGIMSSGILYSVQGVVMESKGPVFVTAFGPLSMVIVAILGS ILLSEILYMGRVVGAMVIVTGLYMVLWGKSRDEKVVSNITRSNDKVTNTPLAGNVEATTNIQKKESNGGGGGEEEEFVSIEVSKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10005964 [exp]	0	1
AT4G09890			Protein of unknown function (D...		Lus10033529 [exp]	3.3	0.8709
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Lus10041891 [exp]	10.8	0.8315
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10028030 [exp]	21.5	0.8429
AT5G48130			Phototropic-responsive NPH3 fa...		Lus10001738 [exp]	23.7	0.8178
					Lus10025897 [exp]	33.2	0.8235
AT5G63180			Pectin lyase-like superfamily ...		Lus10014887 [exp]	33.4	0.8110
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Lus10040894 [exp]	49.9	0.7763
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10040861 [exp]	54.0	0.8257
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10028797 [exp]	54.6	0.8180
AT2G14095			unknown protein		Lus10035649 [exp]	62.3	0.8114

Compare expression of checked genes

Lus10005964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.