Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39510 454 / 2e-160 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 397 / 1e-137 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 349 / 1e-118 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 341 / 3e-115 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 337 / 5e-114 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 323 / 8e-109 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 324 / 1e-108 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08300 317 / 3e-106 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 313 / 2e-104 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37450 303 / 3e-101 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029465 [exp] 678 / 0 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 592 / 0 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 585 / 0 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005964 [exp] 506 / 1e-180 AT2G39510 433 / 7e-152 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029464 [exp] 501 / 1e-178 AT2G39510 429 / 2e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040310 [exp] 447 / 2e-157 AT2G39510 430 / 1e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023431 [exp] 446 / 1e-156 AT2G39510 425 / 8e-149 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 400 / 1e-138 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10025308 [exp] 401 / 9e-134 AT2G37460 487 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209200 [exp] 507 / 0 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 495 / 4e-176 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 397 / 6e-138 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 360 / 8e-123 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051400 [exp] 354 / 6e-121 AT5G13670 405 / 4e-141 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 355 / 1e-120 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 352 / 2e-119 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 347 / 7e-118 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 337 / 2e-113 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 331 / 3e-111 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10005965 pacid=23146043 polypeptide=Lus10005965 locus=Lus10005965.g ID=Lus10005965.BGIv1.0 annot-version=v1.0 ATGAAGTCGTGTTGGTCATCAAAGTTGTGCAATCAGGCAAAGCCATTTCTAGGTGTGATCTTCATACAATTTGGATATGCAGGAATGTCCATAATCTCAA AGTTCGCTCTCAACAATGGAATGAGCCAACATGTTCTTGTTGCCTACAGACATGCCATAGCCACTGCTGTTATTGCTCCCTTTGCCTTAATCTTTGAAAG GAAGCTAAGGCCAAAGATGACTCTGGGGATCTTCTTCAAGATAGCACTCCTTGGCTTGTTAGAGCCAACAATAGACCAGAACTTGTACTATACTGGGATG AAGTACACATCAGCAACTTTTGCTTCTGCTATGTGCAACGTTCTCCCTGCCTTTGCATTCCTAATGGCTTGGGCTTTAAGACTTGAGAAAGTAAACTTGA GGAAGAAGCATAGCCAGGCAAAAGTATTGGGGACAATAGTGACTGTTTTGGGAGCCATGTTACTGACTTTGATCAAAGGTGCAAGGCTGGATCTGCCATG GACAAAAGGGATTCATGATGCTGTTGCTGCTGATCATTCTGTAGCTTCTGCTCAGAATCCTACTAAGGGTGCAGTTATGATCGCAATTGGTTCGGTTTGC TGGTCTGGTTTTGTGATTCTTCAGGCAATCACTCTGAAATCATACCCAGCTGAGCTGTCCCTAACAGCTATGATATGCATGTGTGGAACAATTCAGGGCT CAGTTTTGGCCTTGGGGGTGGAATGGGGGAATCCCTCTGCTTGGGTTCTTGGTTTCGACACCAATTTGCTTGCAGCTGTTTATAGTGGAGTGATATGCTC GGGACTATCGTACTATGTCCAAGGAGTGGTGATGCAGAGCAAGGGCCCGGTTTTCGTTACAGCTTTCGGCCCATTGAGCATGGTGATTATCACAATCATG GGTTCCATTTTCTTATCTGAGGTTCTCTACATGGGAAGAGTACTTGGAGCAGTGGTGATAGTAACAGGATTGTATATGGTTCTGTGGGGGAAGACCAAAG ATGAGCAGCCTAACACTGGAAACGACAAGGTGGCTGATTTGCCAACTGCTGCAACTGCTACTGCATCATCATCAGTGAACGTTGAGAAGACACAAGATGG TGGGGAACTTGTTTCCCTTGAAGTTTCAAGAGAATGA
AA sequence Show only first row Show all	>Lus10005965 pacid=23146043 polypeptide=Lus10005965 locus=Lus10005965.g ID=Lus10005965.BGIv1.0 annot-version=v1.0 MKSCWSSKLCNQAKPFLGVIFIQFGYAGMSIISKFALNNGMSQHVLVAYRHAIATAVIAPFALIFERKLRPKMTLGIFFKIALLGLLEPTIDQNLYYTGM KYTSATFASAMCNVLPAFAFLMAWALRLEKVNLRKKHSQAKVLGTIVTVLGAMLLTLIKGARLDLPWTKGIHDAVAADHSVASAQNPTKGAVMIAIGSVC WSGFVILQAITLKSYPAELSLTAMICMCGTIQGSVLALGVEWGNPSAWVLGFDTNLLAAVYSGVICSGLSYYVQGVVMQSKGPVFVTAFGPLSMVIITIM GSIFLSEVLYMGRVLGAVVIVTGLYMVLWGKTKDEQPNTGNDKVADLPTAATATASSSVNVEKTQDGGELVSLEVSRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10005965 [exp]	0	1
AT5G67140			F-box/RNI-like superfamily pro...		Lus10039564 [exp]	3.0	0.9006
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10029464 [exp]	3.2	0.8283
AT1G20823			RING/U-box superfamily protein...		Lus10016040 [exp]	6.0	0.8739
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10040380 [exp]	7.4	0.8701
AT2G25625			unknown protein		Lus10013129 [exp]	8.2	0.8766
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10007085 [exp]	9.6	0.8744
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10000705 [exp]	14.0	0.8391
AT4G33040			Thioredoxin superfamily protei...		Lus10013519 [exp]	14.5	0.8484
AT4G16360			5'-AMP-activated protein kinas...		Lus10006390 [exp]	15.3	0.8219
AT2G16980			Major facilitator superfamily ...		Lus10023994 [exp]	18.7	0.8333

Compare expression of checked genes

Lus10005965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.