Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01260 470 / 8e-160 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT2G46510 241 / 6e-72 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G16430 162 / 1e-43 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G17880 134 / 3e-33 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 132 / 1e-32 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G32640 129 / 2e-31 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46830 111 / 1e-25 bHLH ATNIG1, bHLH028 NACL-inducible gene 1 (.1) AT1G63650 91 / 4e-19 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G00870 90 / 5e-19 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09820 89 / 2e-18 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030243 [exp] 955 / 0 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10024871 [exp] 156 / 2e-41 AT4G16430 448 / 5e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018787 [exp] 152 / 7e-40 AT4G16430 447 / 8e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000037 [exp] 132 / 5e-35 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 132 / 2e-32 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 130 / 8e-32 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004575 [exp] 128 / 2e-31 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004574 [exp] 129 / 3e-31 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005999 [exp] 106 / 3e-24 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G099700 [exp] 615 / 0 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G172101 [exp] 613 / 0 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G221100 [exp] 172 / 4e-47 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G042000 [exp] 172 / 9e-47 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G092200 [exp] 138 / 2e-34 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.001G142200 [exp] 136 / 8e-34 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.002G176900 [exp] 117 / 5e-28 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G103700 [exp] 112 / 3e-26 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G083500 [exp] 105 / 5e-24 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G147300 [exp] 105 / 7e-24 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005966 pacid=23175081 polypeptide=Lus10005966 locus=Lus10005966.g ID=Lus10005966.BGIv1.0 annot-version=v1.0 ATGAAGTTTGAGGTGAGCAGCAGATGCGGCGGTGGGGCGTGGAACGAGGAAGACAAGGCGATAATCGCAGCGATTCTGGGGAACAAGGCTTTCGACCATT TGATTTCCAAAACGGTCTCGAACGAGAATCTGTTGACCACCGCCGTGACCGACGACGACAATCTGCAGAACAAGCTCTCCGATCTCGTCGACCGTCCTTC CTCGAGCTTCAGCTGGAACTACGCAATCTTCTGGCAGATTTCCTACTCCAAGTCCGGCGATTGGGTCCTCTGCTGGGGAGACGGGTCCTGCCGGGAGCCC CATGGATCCGAACCGGTGCTCGGTCGTCGGGTTGAGGACGACCCGACCAAGCAGCGGATGAGGAAGCGGGTCATCCACAAGCTGCAGCAGCTGTTCGGCG GGTCGGAGGACGGTGAAGACGACGTCGTAGATGAAGACTACGCTCTCGGGTTGGATCGGGTTACCGATACAGAGATGTTCTTCTTGGCTTCCATGTACTT CTCCTTTCCCAAAGGGGAAGAACGTGGCCCCGGTAAAGCTTTCGAATCCGGTAACCATATCTGGATCTCAAATGCTTTGAATTCGAAATCCGATTACTGT GTTAGGTCGTTTCTCGCTAGGTCCGCCGGGATTCAGACCGTTGTTCTTATCCCGACCGACGTCGGCGTTCTTGAATTAGGATCGGTTAGATCGGTTCCTG AGAGCGTCGAGTTGGTTCAATCCATGGCGGCTCACTTCTCTTCTCGTCCTAGATTGAAGCCGGTAGCTATTCCGGTGCAGGCAGCACCGGCCGTTGTTGC TATGCCGGTGGTGAGTGAGAAGAAGAAGGATGAGATTAATTCTGGATTTGGGAATTTAGGATTTGTGGAGAGGATTGAAGCGATTCCTCAAAAAATCTTC GGGCAGGATTTCAACAGATCGAATAATAATAATCATCATCATCATCATGGATATAGAGAGAAATTGGCGGTGAGGAAGATGGAAGAGAGGCCTCCGGTTT CGAATCCGAATCCGGCTGCGAACTGGGGAGCGAAAGCTGCAGCGAACAACATTCAGGAGTTTGGGAATGGAGTTAGGGAAGAGTTCAGGATTAGCCATTA TCCATCACAGCAGAAGCAGCAAGGCCAATTGCAGATAGATTTCTCCTCGTCTGGTTCGATGGTTGTTGCTAGGCCGATTCCTAGCGTAGAGTCCGAATGT AATTCGGACGGGGAGGGTGCTACTCCATTGACGAAGGACGATAAGAGGCCAAGAAAGCGCGGTAGGAAACCTGCAAACGGTCGAGAAGAGCCTTTAAACC ACGTCGAGGCGGAGAGGCAGAGACGAGAGAAGCTAAACCAGAGATTCTACGCGTTACGAGCAGTCGTGCCCAACATTTCGAAGATGGACAAGGCTTCCTT GTTGGGGGACGCCATTGCTTACATAAACGAGCTTCAAGCTAAGCTCAAAATGATGGAGGCAGAGAGAGGGGTAGGAACCGGAACCGGTTCCGGTACCGGT TTGATAGATGTGGATGTGCAGGCTTCGTCTTCGAACGACGAGGTGATGGTAAGAGTGAGCTGCCCTTTCGATTCGCACCCTGCATCGAAGGTGATCCAGG CATTCAAGGAAGCGAAGATCACTGTGATCGACTCGAAACTTGCTGCAGCAAACGAGACGGTGTACCATACGTTTGTGGTGAAGGCGCAGCAAGGGTCAGA ACAGCTGACAAAGGAGCGGCTAATGGCGGTATTTTCTCATGAATCATCAAACTCTGCCTTACAGCCATTGTCGACTGCTGTGTAA
AA sequence Show only first row Show all	>Lus10005966 pacid=23175081 polypeptide=Lus10005966 locus=Lus10005966.g ID=Lus10005966.BGIv1.0 annot-version=v1.0 MKFEVSSRCGGGAWNEEDKAIIAAILGNKAFDHLISKTVSNENLLTTAVTDDDNLQNKLSDLVDRPSSSFSWNYAIFWQISYSKSGDWVLCWGDGSCREP HGSEPVLGRRVEDDPTKQRMRKRVIHKLQQLFGGSEDGEDDVVDEDYALGLDRVTDTEMFFLASMYFSFPKGEERGPGKAFESGNHIWISNALNSKSDYC VRSFLARSAGIQTVVLIPTDVGVLELGSVRSVPESVELVQSMAAHFSSRPRLKPVAIPVQAAPAVVAMPVVSEKKKDEINSGFGNLGFVERIEAIPQKIF GQDFNRSNNNNHHHHHGYREKLAVRKMEERPPVSNPNPAANWGAKAAANNIQEFGNGVREEFRISHYPSQQKQQGQLQIDFSSSGSMVVARPIPSVESEC NSDGEGATPLTKDDKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKMMEAERGVGTGTGSGTG LIDVDVQASSSNDEVMVRVSCPFDSHPASKVIQAFKEAKITVIDSKLAAANETVYHTFVVKAQQGSEQLTKERLMAVFSHESSNSALQPLSTAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Lus10005966 [exp]	0	1
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Lus10030243 [exp]	1.0	0.9344
AT5G17850			Sodium/calcium exchanger famil...		Lus10005673 [exp]	2.0	0.9297
AT1G18740			Protein of unknown function (D...		Lus10028578 [exp]	3.0	0.9133
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10035366 [exp]	7.5	0.8970
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10004500 [exp]	7.5	0.8842
AT1G74450			Protein of unknown function (D...		Lus10042809 [exp]	7.7	0.8966
AT5G42570			B-cell receptor-associated 31-...		Lus10030043 [exp]	11.2	0.8797
AT3G07790			DGCR14-related (.1)		Lus10006367 [exp]	13.3	0.8730
AT4G00300			fringe-related protein (.1.2)		Lus10005120 [exp]	14.7	0.8948
AT5G11070			unknown protein		Lus10001943 [exp]	14.8	0.8661

Compare expression of checked genes

Lus10005966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.