Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46520 1051 / 0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030241 [exp] 1406 / 0 AT2G46520 1438 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030423 [exp] 463 / 2e-156 AT2G46520 398 / 6e-129 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10026635 [exp] 425 / 3e-139 AT2G46520 363 / 3e-113 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030433 [exp] 266 / 9e-83 AT2G46520 212 / 5e-62 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030434 [exp] 269 / 3e-82 AT2G46520 449 / 6e-149 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100000 [exp] 1107 / 0 AT2G46520 1464 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.002G172700 [exp] 1093 / 0 AT2G46520 1421 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08506 [flax] [poplar] Cse1 Cse1 CL0020 [flax] [poplar] TPR PF03378 [flax] [poplar] CAS_CSE1 CAS/CSE protein, C-terminus
Representative CDS sequence Show only first row Show all	>Lus10005968 pacid=23175067 polypeptide=Lus10005968 locus=Lus10005968.g ID=Lus10005968.BGIv1.0 annot-version=v1.0 ATGGAGAGTAGTGGCCCTGGACTTGCTGTCACAGATGACCTCAGAGCTGCTGTTTGTGAGAATATTAGTCTTTACATGGAGAAGAACGAGGAAGAGTTCC AACCCTTCTTGAATGATTTTGCACATGCTGTTTGGAGTCTGTTGGTCAATGTGTCTCAGAATGCTAGCCGTGATAGGTTGGTGTTGTTCAGTGTGTCTCA AAATTCTAGCCGTGATAGGTTGGCTGTTACTGCTATTAAATTCTTAACTACAGTGAGTACCAGTGTGCATCACAGTTTGTTTAGAGAGGATGGTATGATA CTGCAGATATGTCAGAATATTGTGATTCCTAATGTTCGTTTGAGAGATGATGATGAGGAGCTGTTTGAGATGAATTACATCGAGTATATCAGGAGGGATA TGGAGGGTAGTGATCATGACACGAGGAGGAGGATTGCTTGTGAGTTGCTGAAGGGGATTGCAACAAATTATAAGCAGCAAGTAACTACTATAGTTTCTGC TCAGGTACAAAATTTGTTGAATTCTTATGCAACTAATCCGGCAGCAAATTGGAAGGACAAGGACTGTGCAATATATCTTGTGGTGTCCCTTGCCAGCAAG AAATCAGGAGGCGTTGATGTTTCAACTGATATAGTTGATGTTCAAAGCTTCTTTGCTTCAGTCATAGTGCCCGAGTTACAAAGCCAGGATGTTAACTCAT GTCCGATGCTCAAATCTGGTGCTCTTAAGTTCTTCACAATGTTCAGAAATCAGATACCGAAGCATCTTGCAATTCATTATCTTCCAGATTTGGCGCGGTT CCTTGGTGCAGAGTCAAACGTAGTACATTCTTATGCTGCCAGTTGTATAGAGAAACTGCTGCTGGTTAAAGATGATGGAGCATCGGCAAGGTATACTGCA TCAGATTTGGCTCCATTTGTTCTGGTGCTGATGAACAACCTATTTAATGCATTGAAGTTTGCAGAATCCGAGGAGAATCAGTACATCATGAAGTGTATCA TGCGTGTAATAGGGGTAGCAGAAATAAATGGTGATATTGCCGGTCCTTGCAGTATTGGGTTGACATCAATCCTCAATATAGTTTGCAAAAACCCCAAAAA TCCTGTTTTCAACCACTATCTGTTTGAGTCGGTAGCTGTTCTTCTGAGGCGAGCATGTGACAGGGATAGAGCTCTCATACCACTTTTTGAAGATAGATTA TTCCCCAGTCTCCAGTTGATCTTGGCGAATGATGTGACTGAATTTTTGCCGTATGCTTTTCAGCTCTTGGCCCAACTGGTCGAGTTGAATCAGCCGCCTA TTCGTCCTATTTACATGCAGATCTTTATGCTCCTCCTCTCTCCTGAATCATGGAATACAAGTTCAAATGTTCCTGCCCTTGTACGCTTACTGCAGGCCTT TCTTCAGAAAGCACCACATGAGCTCAACCAAGAGGGGCGCCTTAGCCAGGTGCTTGGTATATTCGACCGGCTTATATCATCTTCAAGCTCCGAGGAACAG GGCTTCCATCTTTTAAACACTGTTATTGAGAATCTTGAATTTGCCGTCATCTCCCCCTACATGGTTCACATCTGGGCTGCCCTATTCACCCGTTTGAAGA AGAAAGAGACAGTCAAGTTTGTGAAGTCTCTTGTGATTTTCATGTCACTGTTTCTGATCAAGCATGGTTCTGGAAACCTCATCGATACAATGAACTCAGT TCAAGCAAACATATTCATGACGATCCTGGAAAAGTTCTGGATACCGAAAGTCAAGCTGATTACCGGACACATTGAGCTCAAGTTAGTTGCTGTTGCATCG TGCAGACTTATCTGCGAGTCTCCTGCTCTTTTGGACCCGGCAGCTGCTAGTCATTGGGGGAAAATGCTGGACAGCATCGTCACTCTCCTCTCAAAGCCAG AGGAGCATCGAGTCGATGAGGAACCTGAAATTCCTGATATTTCTGAAACTGGCTATACCGCAACGTTTGTCAATCTTTACAATGCTGGAAAGAAAGAGGA TGATCCGTTGAAGGACATAAGAGATCCAAAGCAGTTCCTTGTGACTTCATTGGCAAGGCTCTCTGCTGCGTCTCCTGGGAGGTTTCCACAAATAATCAAT CAGAATTTGGATTCAGCGAATCAAACAGCACTTCTCCAGCTTTGCAACACTTACAAGTGCTCAATTGTTTAG
AA sequence Show only first row Show all	>Lus10005968 pacid=23175067 polypeptide=Lus10005968 locus=Lus10005968.g ID=Lus10005968.BGIv1.0 annot-version=v1.0 MESSGPGLAVTDDLRAAVCENISLYMEKNEEEFQPFLNDFAHAVWSLLVNVSQNASRDRLVLFSVSQNSSRDRLAVTAIKFLTTVSTSVHHSLFREDGMI LQICQNIVIPNVRLRDDDEELFEMNYIEYIRRDMEGSDHDTRRRIACELLKGIATNYKQQVTTIVSAQVQNLLNSYATNPAANWKDKDCAIYLVVSLASK KSGGVDVSTDIVDVQSFFASVIVPELQSQDVNSCPMLKSGALKFFTMFRNQIPKHLAIHYLPDLARFLGAESNVVHSYAASCIEKLLLVKDDGASARYTA SDLAPFVLVLMNNLFNALKFAESEENQYIMKCIMRVIGVAEINGDIAGPCSIGLTSILNIVCKNPKNPVFNHYLFESVAVLLRRACDRDRALIPLFEDRL FPSLQLILANDVTEFLPYAFQLLAQLVELNQPPIRPIYMQIFMLLLSPESWNTSSNVPALVRLLQAFLQKAPHELNQEGRLSQVLGIFDRLISSSSSEEQ GFHLLNTVIENLEFAVISPYMVHIWAALFTRLKKKETVKFVKSLVIFMSLFLIKHGSGNLIDTMNSVQANIFMTILEKFWIPKVKLITGHIELKLVAVAS CRLICESPALLDPAAASHWGKMLDSIVTLLSKPEEHRVDEEPEIPDISETGYTATFVNLYNAGKKEDDPLKDIRDPKQFLVTSLARLSAASPGRFPQIIN QNLDSANQTALLQLCNTYKCSIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46520			cellular apoptosis susceptibil...		Lus10005968 [exp]	0	1
AT2G32730			26S proteasome regulatory comp...		Lus10007140 [exp]	10.9	0.8787
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10016850 [exp]	17.2	0.8220
AT2G32730			26S proteasome regulatory comp...		Lus10016681 [exp]	18.9	0.8665
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10036002 [exp]	20.2	0.8408
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10022168 [exp]	22.1	0.8367
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10002169 [exp]	27.5	0.8561
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022347 [exp]	28.2	0.8589
AT2G46520			cellular apoptosis susceptibil...		Lus10005969 [exp]	28.9	0.8663
AT5G18230			transcription regulator NOT2/N...		Lus10020262 [exp]	29.0	0.8467
AT5G47400			unknown protein		Lus10007801 [exp]	30.8	0.8269

Compare expression of checked genes

Lus10005968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.