Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46520 197 / 2e-58 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) AT3G59020 47 / 6e-06 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030241 [exp] 293 / 1e-93 AT2G46520 1438 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030434 [exp] 174 / 3e-52 AT2G46520 449 / 6e-149 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10026726 [exp] 47 / 7e-06 AT2G31660 1084 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10025509 [exp] 46 / 1e-05 AT2G31660 1591 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100000 [exp] 223 / 2e-67 AT2G46520 1464 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.002G172700 [exp] 218 / 8e-66 AT2G46520 1421 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.014G149600 [exp] 45 / 1e-05 AT2G31660 1543 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.002G232600 [exp] 44 / 7e-05 AT2G31660 1499 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.008G109300 [exp] 41 / 0.0005 AT1G26170 1339 / 0.0 ARM repeat superfamily protein (.1) Potri.T108626 [exp] 40 / 0.0007 AT1G26170 1345 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08506 [flax] [poplar] Cse1 Cse1 CL0020 [flax] [poplar] TPR PF08389 [flax] [poplar] Xpo1 Exportin 1-like protein CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005969 pacid=23175070 polypeptide=Lus10005969 locus=Lus10005969.g ID=Lus10005969.BGIv1.0 annot-version=v1.0 ATGGATTTGAGCCCCAATTTCCTCGCCCAGTGCTTCGTTGACACACTCTCCCTAGCTCGGGAGACCCGCAGGGCCGGCGAGGACCGCCTCCAAGCAGCCG CGAACGCTCCAAACTACGCGCTCGCCGTTCTTAACTTGGTCGGTACGCCGTCCGTCGACGACCAGATCCGTCGCGCGGCGGCTGTCAACTTCAAGAACCA CCTCCGCCAGCGATGGGTGCCGGGACAGGATTCCGACTTCAATCCGATCTCCGATGACGAGAAGAACCAAATCAAAAACCTAATCGTCTCTCTCATGCTA TCGTCGTCTCCTCAGATCCAGTCGCAGCTCAGTGAAGCCCTTTCTCTAATCGGTAAACACGATTTCCCTAAACTGTGGGCATCTTTGCTCCCTGAGCTCG TCGCCAATCTCCAGGCTGCATCGCAGGCCAACAATTACGCTACTGTCAATGGTATTCTCGAGACGGCTAACTCGATCTTTAAGAAGTTCCGGTATCAGTA TAAGAGTAACGAGCTTTTCCTTGAATTGAAGTATTGTCTTGATAACTTTGCTGCTCCGTTTTATTATTTTTGCCCACCTGTCGTTGAAATGGTCCCGAAA CCCTGCCGCACTTATAGACTCTGCAGTTAG
AA sequence Show only first row Show all	>Lus10005969 pacid=23175070 polypeptide=Lus10005969 locus=Lus10005969.g ID=Lus10005969.BGIv1.0 annot-version=v1.0 MDLSPNFLAQCFVDTLSLARETRRAGEDRLQAAANAPNYALAVLNLVGTPSVDDQIRRAAAVNFKNHLRQRWVPGQDSDFNPISDDEKNQIKNLIVSLML SSSPQIQSQLSEALSLIGKHDFPKLWASLLPELVANLQAASQANNYATVNGILETANSIFKKFRYQYKSNELFLELKYCLDNFAAPFYYFCPPVVEMVPK PCRTYRLCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46520			cellular apoptosis susceptibil...		Lus10005969 [exp]	0	1
AT2G07820			unknown protein		Lus10015035 [exp]	2.2	0.9674
AT3G08960			ARM repeat superfamily protein...		Lus10004753 [exp]	4.1	0.9495
AT5G23430			Transducin/WD40 repeat-like su...		Lus10041007 [exp]	7.2	0.9404
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10000087 [exp]	7.3	0.9610
AT3G12440			Polynucleotidyl transferase, r...		Lus10000103 [exp]	7.5	0.9604
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Lus10013253 [exp]	8.4	0.9371
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003102 [exp]	8.9	0.9588
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025169 [exp]	9.0	0.9606
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10013101 [exp]	9.2	0.9506
AT3G63460		EMB2221	transducin family protein / WD...		Lus10016374 [exp]	9.8	0.9544

Compare expression of checked genes

Lus10005969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.