Plant FIBer expression Database

Lus10005971 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G53200 65 / 7e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030239
[exp]
320 / 5e-106 AT1G53200 257 / 4e-77 unknown protein
Lus10011648
[exp]
123 / 9e-32 AT1G53200 216 / 7e-62 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G106300
[exp]
125 / 1e-32 AT1G53200 302 / 1e-93 unknown protein
PFAM info
Representative CDS sequence
>Lus10005971 pacid=23175077 polypeptide=Lus10005971 locus=Lus10005971.g ID=Lus10005971.BGIv1.0 annot-version=v1.0
ATGCAAGGGGATGTCGAGGGGCAGCTCCAGGATGTTAGAAGCCTAATGCAGGAACACGAATTCGAGAGTCATCCAATGTTCAACACTATCATTGCCCTGT
TTTTCTATCAGCTGTGGTACTCCGGCATTCCGGAAGGCATGAAATTGAAGCATTTCAACCAAGCACATCATGATATCCCTTCGGACATGGAAGTGGACCA
TTCACGTTCAGATGGATTGGCTTCAGGGCCTGAGGATTGTAATGCTGGCAATGACTCTGAAGGAAATAATTCGGTGTACAGTGACGAAACTAAATCTCTT
ATATGTGGCTCCGAGACATCCATCATGAAAAGTAAAGCTGTCTTGGACCGTAATAGCATTGATTCACATAAAGAAAATATCCACGTAGAGTTCCAGCCTA
GAGGCTTTTATGCTAATTCAGCTGACGAGGCTTCGTATGATCAGGCTGATGATGTTTACTCTATGCAAGGCTTACCTATCCTTGAGGCCCTTAATCAGCT
GGACAAATTCTGTGCTAATTCAAGCGCCTCGCTTCCCCGTAGATTGAAATCCTGTCTCCTGGAGCGTATCGATCCAGACAATGGCGACTTACTTTCACGC
TGTTACGAGGATAGGTTGAAGAGTGATCCTACATGTAGCCGGTCATTGGCAGGGCTTATGAGCCTTCATGAGCAAGGAATCTATAACCCAGACGCCCTGT
TAGAAATGATAGCTACGCATTTAGACGCTGCTGCTGACGTGGCTGAAACCAATGTGTGGAGAGAGTTCGCTTTATGA
AA sequence
>Lus10005971 pacid=23175077 polypeptide=Lus10005971 locus=Lus10005971.g ID=Lus10005971.BGIv1.0 annot-version=v1.0
MQGDVEGQLQDVRSLMQEHEFESHPMFNTIIALFFYQLWYSGIPEGMKLKHFNQAHHDIPSDMEVDHSRSDGLASGPEDCNAGNDSEGNNSVYSDETKSL
ICGSETSIMKSKAVLDRNSIDSHKENIHVEFQPRGFYANSADEASYDQADDVYSMQGLPILEALNQLDKFCANSSASLPRRLKSCLLERIDPDNGDLLSR
CYEDRLKSDPTCSRSLAGLMSLHEQGIYNPDALLEMIATHLDAAADVAETNVWREFAL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G53200 unknown protein Lus10005971
[exp]
0 1
AT1G48320 Thioesterase superfamily prote... Lus10036869
[exp]
1.4 0.9130
Lus10015488
[exp]
1.4 0.9196
AT1G61100 disease resistance protein (TI... Lus10025112
[exp]
2.6 0.8908
AT4G04350 EMB2369 EMBRYO DEFECTIVE 2369, tRNA sy... Lus10020041
[exp]
4.2 0.9072
AT2G30860 GLUTTR, ATGSTF7... glutathione S-transferase PHI ... Lus10029816
[exp]
5.7 0.8983
AT1G31660 unknown protein Lus10027134
[exp]
10.0 0.8582
Lus10023803
[exp]
10.1 0.8951
AT5G14930 GENE101, SAG101 senescence-associated gene 101... Lus10004841
[exp]
10.2 0.8960
AT5G47090 unknown protein Lus10021704
[exp]
10.2 0.8778
AT2G30860 GLUTTR, ATGSTF7... glutathione S-transferase PHI ... Lus10020736
[exp]
11.2 0.8845

Lus10005971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.