Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00950 53 / 5e-08 MEE47 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) AT5G53030 43 / 7e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030238 [exp] 342 / 4e-120 AT4G00950 61 / 1e-10 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) Lus10010114 [exp] 49 / 1e-06 AT4G10810 63 / 5e-13 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G172900 [exp] 85 / 1e-19 AT4G00950 113 / 5e-30 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) Potri.014G100200 [exp] 80 / 1e-17 AT4G00950 87 / 7e-20 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) Potri.015G011900 [exp] 47 / 2e-06 AT4G27810 97 / 3e-25 unknown protein Potri.012G016700 [exp] 44 / 2e-05 AT4G27810 87 / 1e-21 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [flax] [poplar] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Lus10005972 pacid=23175063 polypeptide=Lus10005972 locus=Lus10005972.g ID=Lus10005972.BGIv1.0 annot-version=v1.0 ATGGCAGAACAAGAACAAGAAGAAGAAGAAAGAACACCAAGACTGCAACTTTTCAGCAGCCCACATTCCATGAGAATGCATCAACAACAACAACATCTCC TCCAGTCTTCTTCACCACTCCACACATCAGCAGCTTCTGTGCCCTTCAGATGGGAACAACATCCTGGGAAACCAATCCATGATAATGATGATCTTGATGA TGTTCATTTACTAGATTTTGAGCCCAAGAAGAAGAGCTTGGATCTCCCACCAAGGATGCTGGTCATGGAGGAAGCAGACAGGTCAAAGCTCCAGTCTTCA TCTTTCAGAAATGTGAAGAGGGATTGGCAGCTGGGTACTTCTTTCAGGAGGACTGAGAGCAGCCTTGATGGAAGAAGAGGGGTTTACAGGTCTTTGAAGG TTTTGTTCAAAGGTGGTCATAATGATGTCAGCAGTAATAATGGTGGTGGGAGAGAAGTTGGGGGAAGTTACAGTAGCTATGTGTTTCCAGCTTATTTGGA TGGTGGTGGGTGTAGTAATCTGAGTTATGATGAGGAACAAGGGACATGTAACGAGGTTAAAGTGGTGGCATCAACAACTACAACTACAGAGATTAGCAGA TCAGGAAGCTTTTCTGCTGTTACAAAGTCTCATCATTTCTGGGCAACCATTTATGAAGGGTTGAAGCAAGTGGTACCATGGAGGAGGAAAAATGGGAAGA AGACTAAAGACAGAGCAGGATTCCTCCCATGA
AA sequence Show only first row Show all	>Lus10005972 pacid=23175063 polypeptide=Lus10005972 locus=Lus10005972.g ID=Lus10005972.BGIv1.0 annot-version=v1.0 MAEQEQEEEERTPRLQLFSSPHSMRMHQQQQHLLQSSSPLHTSAASVPFRWEQHPGKPIHDNDDLDDVHLLDFEPKKKSLDLPPRMLVMEEADRSKLQSS SFRNVKRDWQLGTSFRRTESSLDGRRGVYRSLKVLFKGGHNDVSSNNGGGREVGGSYSSYVFPAYLDGGGCSNLSYDEEQGTCNEVKVVASTTTTTEISR SGSFSAVTKSHHFWATIYEGLKQVVPWRRKNGKKTKDRAGFLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00950		MEE47	maternal effect embryo arrest ...		Lus10005972 [exp]	0	1
AT4G19670			RING/U-box superfamily protein...		Lus10018293 [exp]	1.7	0.8820
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	6.0	0.8397
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	7.5	0.8347
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10028937 [exp]	8.9	0.8224
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10003217 [exp]	12.0	0.8042
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10034099 [exp]	12.3	0.7913
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10041366 [exp]	15.6	0.8290
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10004821 [exp]	20.0	0.8210
AT5G38900			Thioredoxin superfamily protei...		Lus10005083 [exp]	22.9	0.7860
AT3G47160			RING/U-box superfamily protein...		Lus10006447 [exp]	26.0	0.8131

Compare expression of checked genes

Lus10005972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.