Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46560 869 / 0 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030236 [exp] 2108 / 0 AT2G46560 1939 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G173300 [exp] 1232 / 0 AT2G46560 2269 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF12234 [flax] [poplar] Rav1p_C RAVE protein 1 C terminal
Representative CDS sequence Show only first row Show all	>Lus10005974 pacid=23175069 polypeptide=Lus10005974 locus=Lus10005974.g ID=Lus10005974.BGIv1.0 annot-version=v1.0 ATGGGAAGACACCAACTTGAGTTGGCTATTGCCTTCTTCCTTCTAGGAGGGGATACTAGTTCTGCAATCACTGTGTGCGCAAAGAACCTTGGGGATGAAC AGCTGGCATTGGTAATTTGTCGGCTGATTGAGAGTCGTGGTGGACCATTACATCGTCACGTAATAACAAAGTTCATACTGCCATCAGCCCTTGAAAAAGG TGACTCCTGGATTGCGAGCTTACTTGAGTCGGAGTTGGGCAATTATTCACAATCTTTCCTCAGAATGGTAGACTTAACTATGGGTTCCGCAGTCGACAAG ACTTCCTTTTGGTCCAATCATGCTGCTTTTGAGGACCCCAATATCGGTTTATTTTGCTTCTTCCTAGCAACCAAGAATAGCATGAAGAATGCCGTCGGGG AGCTGAATGCCGCAATTTTTAGTAGGTGGGGAACGTTTCTAGCAGCCACTGCCTTCAGCCGCTGTGGTCTTCCTCTTGAAGCTCTGGAGTGCCTTTCATC TTCGACAGTTTCGGCCGTGGATCAAGGGACTTTGTCAAATGATGGTCAAGCTCCCGAGGAACTCCAATCATTATTTGCCAGTGATCCATTTAACTGGTCG TCAAGTGATGTAGCTTTATATACAGAATCTATTAGTAAATTGGATCTGTCTCTCCAGTATCTATCAACATTGGCTAGGGAGCATCCCAGTTGGCATGGTA CTGTTGTAGATTCAGTTGGACCTCTTCAGCATGACAAATCAAGTGAAGTTTTCCGTGAGAAGTTATACGAGGCACTTGCCAGTTTTGAACGGAAGTTCTC AGTTAGTTCTTCTTCTATGATAAAAATGGTTGTAGTCTGGTTGTGCAATAATGGCTTATGGTTCGCTGGATGTGATATGTTGTTGGACTATGCTTCTAAA GGTTATTTACAAGACGAGACCTATGCTGTTGATGGTTCTAACTTGCACCCTATTCTGTATAATCTTCTTTCCAGAGCTGTTGATGATACTTCCCTTGTGC TTTCACGGTTTATTGTTTCTTGTAACGTTACTTGCTGCCCACGGAAGTTAAGTGACATAAAGAATGAGGGCGCTGTTGAAGTTACATCTGTATTTCCAAA TCCACTGGGGCTGTACCTTCAAGGCATCACAGAGATACTGCGTGGCTTGAGATCTGCCTTTAGACTGTTGTCCGGACAATTCTCCATGGACATCACAAAA TCCCTTGTCATTCTTGATTTGTTCGAGTATTACGTGCATATTGCATCTGCTTGGTTCCAGCATAGCTCAAAAGGTCTTCAGTTGATGGTGCATCCTCTCT TGATTACCTGCACAGATGGTCGTACTCCTTATGAAGTGGATACAGGAAATCTCAAGAGCATCCTACATCACATATCAGAGTTGTTGGCTTCCAATTTGTC AACAAATGATTTCGGATCAGGACATGAGGACGATAAACATGTGCCGTGTGGCCAAATCGGTAAAAAGCTGCCAAAGTTATCAGAAGAAGAAAAATGGATT GCAATTGGGGCTTGCTTATGGCTGCACATGTCCAAATTGATGAAGCACAAATTGCATGTATTGTCCATTAAACTTGATGATGATTGTTATGCTGGCCAAA TTTCATCTTTGCAGTATGGTATTGCACGGATTGGATCTGATGGAAGCAACATTAATGATCACGCGGGGGATTTTTCACCAGTACTAGCCAAGTTACTTGA CGCTTCAGTTGCACATATATCATCTTCTCATGTGAAACTCCTGGGCTCATTCCTGCAACATGAGGTCAAGAAGAGGCAGCCAGTGCCGCTTATCACATGG TTGGAAGATTCACACGGAGCTCATGCTCAAGTCCACTATCAGGATGTCAGTGCTGATGTACTCAACAGTAAAGATGAAGCCTCTACGCTTGATATATTGT GGGCTTCCTGTGCTGACCCTAAAATTATATCTGAAGGTTTTTTGCACGAAAACTTGAATTTGATGCAGTTTTTCAATCTTAAAAGAACTGTAAGCTGGAT TGATTTGTATAAGGGCGAGTCAGAGCACCACAGAATGTTAGAAACTCCTGATCACGATGCCAAGATCAGTAGTAGTGCAGTCAATGATGAAGATGGGTTC TCTGTTAAAGAGCTGTTTACGAGTTTCTTTAACCTGTTGAGTTCCTGGCCGAAGGATGCAGTGGTTAGCAGGACGGCTTCAAATTTCCAAAATGTACGAG AAGTACATAGGAGAGAGGGAGAGCTGCTGGAGGCACTGTGTATGAACTCTATCAGTAAAGGGGAAGCTGCGCTTGCCAGCAGTCAAAAGGGCATAGTTTT CTTTAATTGGGCTGACAATACACTAAGGTCCAGGGATGAACCACATCATATATGGTCAGAGGTTGATTGGCCACCAAATGGTTGTGCTGGTGCTGAATCA ACCCCAGTTCTTGGCCTCGGAAGGGCCTCTGGGTTGGGCGGGGAAGTTCAGGAGGATCTTGAGGATCCTGAGGTGTCTGCATACCAACCAGCCACTGCCA GAGATATCATTTCCAGGGCTATCTCCAGTCATCCTTCCAGACCATTGTTCTTGGTCGGTTCCAGCAATACCCACATTTACTTATGGAAGTACGGTAAAGA AAAAGCGACTGCAACATATGGAGCACTCCCAGCTGGAAATCTTCCTACGCAATATGCTCTTGCATCGATCGCTGCACTGCAATTTGACAATTGCGGGGAC GGATTTGTTTCTGCTGCATTAGATGGGACTGTTTGTTATTGGGAGCTTGAAGGAGGGAGGAGTCCAACGGCGTCATCTCTTTGCTTTAATTCCCATGCAC TGGATGTTACATATGTTGGTTCAAGTGGATCTGTTGTTGCTGCTGCTGGATACAGCTCTAATGGCGCTAATGTAGTTCTTTGGGACACCTTAGCTCCTTC AAATACAAATTCTCGAACCCCAATCCTCTGCCATGAAGGTGGTGCCCGCTCAGTCTCAGCATTCGATAATGATTTCGGAAGTGGCACGATTTCTCCCCTT ATCGTAACTGGAGGCAAATATGGCGACATCGGGCTGCACGACTTACGCTACGTAGCAACCGGAAGGAGCCTTAAACAACGGCAATACAGCGCATCATCGT CATCATCGTCTAATGGAATGCTGTGGTACGTCCCTAAAGCTCACCTGGGAGGGATCACGACAATCTCAGCGATCCCACAAACAAGCTTGTTCTTGACTGG GAGCAACGATGGAGATGTGAAGCTATGGGACGCCAAGGCAGCCAAGTTGGTCCATCACTGGCCCAAACTGCACGAAAGACGCACCTATGTGCAGCCTAGC TCACGAGGTCACAGCGGAGTCGTTAGGGCCGGTGTGACGGACATACAAGTGGTGTCCCATGGATTTGTAACCTGCGGCGGAGATGGCTCAGTGAAACTGG TTCAGCTAGGGGGTCCTGCCTAA
AA sequence Show only first row Show all	>Lus10005974 pacid=23175069 polypeptide=Lus10005974 locus=Lus10005974.g ID=Lus10005974.BGIv1.0 annot-version=v1.0 MGRHQLELAIAFFLLGGDTSSAITVCAKNLGDEQLALVICRLIESRGGPLHRHVITKFILPSALEKGDSWIASLLESELGNYSQSFLRMVDLTMGSAVDK TSFWSNHAAFEDPNIGLFCFFLATKNSMKNAVGELNAAIFSRWGTFLAATAFSRCGLPLEALECLSSSTVSAVDQGTLSNDGQAPEELQSLFASDPFNWS SSDVALYTESISKLDLSLQYLSTLAREHPSWHGTVVDSVGPLQHDKSSEVFREKLYEALASFERKFSVSSSSMIKMVVVWLCNNGLWFAGCDMLLDYASK GYLQDETYAVDGSNLHPILYNLLSRAVDDTSLVLSRFIVSCNVTCCPRKLSDIKNEGAVEVTSVFPNPLGLYLQGITEILRGLRSAFRLLSGQFSMDITK SLVILDLFEYYVHIASAWFQHSSKGLQLMVHPLLITCTDGRTPYEVDTGNLKSILHHISELLASNLSTNDFGSGHEDDKHVPCGQIGKKLPKLSEEEKWI AIGACLWLHMSKLMKHKLHVLSIKLDDDCYAGQISSLQYGIARIGSDGSNINDHAGDFSPVLAKLLDASVAHISSSHVKLLGSFLQHEVKKRQPVPLITW LEDSHGAHAQVHYQDVSADVLNSKDEASTLDILWASCADPKIISEGFLHENLNLMQFFNLKRTVSWIDLYKGESEHHRMLETPDHDAKISSSAVNDEDGF SVKELFTSFFNLLSSWPKDAVVSRTASNFQNVREVHRREGELLEALCMNSISKGEAALASSQKGIVFFNWADNTLRSRDEPHHIWSEVDWPPNGCAGAES TPVLGLGRASGLGGEVQEDLEDPEVSAYQPATARDIISRAISSHPSRPLFLVGSSNTHIYLWKYGKEKATATYGALPAGNLPTQYALASIAALQFDNCGD GFVSAALDGTVCYWELEGGRSPTASSLCFNSHALDVTYVGSSGSVVAAAGYSSNGANVVLWDTLAPSNTNSRTPILCHEGGARSVSAFDNDFGSGTISPL IVTGGKYGDIGLHDLRYVATGRSLKQRQYSASSSSSSNGMLWYVPKAHLGGITTISAIPQTSLFLTGSNDGDVKLWDAKAAKLVHHWPKLHERRTYVQPS SRGHSGVVRAGVTDIQVVSHGFVTCGGDGSVKLVQLGGPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46560			transducin family protein / WD...		Lus10005974 [exp]	0	1
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10025454 [exp]	2.0	0.8961
AT4G24100			Protein kinase superfamily pro...		Lus10033230 [exp]	4.5	0.8790
AT1G27170			transmembrane receptors;ATP bi...		Lus10038533 [exp]	5.5	0.8766
AT1G58230			binding (.1)		Lus10042866 [exp]	7.3	0.8949
AT5G15680			ARM repeat superfamily protein...		Lus10035141 [exp]	7.7	0.8745
AT1G48090			calcium-dependent lipid-bindin...		Lus10017107 [exp]	7.9	0.8978
AT4G24100			Protein kinase superfamily pro...		Lus10000878 [exp]	11.5	0.8683
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009711 [exp]	15.0	0.8638
AT4G00800		SETH5	transducin family protein / WD...		Lus10030199 [exp]	26.7	0.8597
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10002603 [exp]	27.7	0.8560

Compare expression of checked genes

Lus10005974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.