Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24430 608 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09880 527 / 0 Rhamnogalacturonate lyase family protein (.1) AT2G22620 505 / 3e-173 Rhamnogalacturonate lyase family protein (.1.2) AT1G09890 483 / 6e-164 Rhamnogalacturonate lyase family protein (.1) AT4G37950 482 / 5e-163 Rhamnogalacturonate lyase family protein (.1) AT1G09910 470 / 2e-158 Rhamnogalacturonate lyase family protein (.1) AT4G38030 437 / 1e-145 Rhamnogalacturonate lyase family protein (.1) AT1G65210 168 / 6e-48 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030233 [exp] 544 / 0 AT4G24430 776 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10028212 [exp] 496 / 1e-168 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10039627 [exp] 473 / 4e-160 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10012720 [exp] 463 / 2e-155 AT2G22620 706 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10004281 [exp] 436 / 7e-145 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10029552 [exp] 423 / 8e-142 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10019231 [exp] 426 / 3e-140 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10005979 [exp] 423 / 2e-139 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10030232 [exp] 416 / 2e-135 AT1G09880 661 / 0.0 Rhamnogalacturonate lyase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110300 [exp] 641 / 0 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 625 / 0 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110000 [exp] 612 / 0 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.006G218500 [exp] 534 / 0 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.014G004500 [exp] 513 / 6e-175 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.005G151500 [exp] 492 / 2e-166 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110100 [exp] 478 / 2e-161 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.011G006200 [exp] 390 / 8e-128 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF06045 [flax] [poplar] Rhamnogal_lyase Rhamnogalacturonate lyase family
Representative CDS sequence Show only first row Show all	>Lus10005978 pacid=23175072 polypeptide=Lus10005978 locus=Lus10005978.g ID=Lus10005978.BGIv1.0 annot-version=v1.0 ATGTCCACCTTGGGTGTGAAGCTGCACATTGATAACAATCATGTGGTGCTGGATAATGGGATACTAAAGCTCACAATATCAAAGCCACAGGGAATAGTCA CTGGAATCACCTACAATGGCATCACCAACTTGCTCGAAGTCCGAAATGATGAAATAGACAGAGGGTATTGGGACCTTGTTTGGAGTAAAGAAGGGAGCAC AGGAACAAAAGGAACTCAGGAAAGAATTAGTGGGACAGAATTCAGTGTGATAGTGGAAAATGAGGGACAAGTCGAAGTCTCATTTGCAAGAACATGGGAT CCTTCCCTTGAAGGCCAGCTTCCTTCTCTTAACATAGACAAGAGGTTCATATTGCTTCGAAACTCGTCGGGATTCTACTCGTACGCGATTTTTGAGCACT TGCCTGAATGGACCCCTTTCCACCTCCCACAAGTCAGGATAGTGTTCAAGCTCAATAAAGACAACTCGGATCCAGCAGTAGGATTCTGGCAGATCACACC TAGCAATGAGTTCAGATCAGGTGGACTAGTGAAACAGAACCTCACATCTCATTGTGGTCCGATCAATCTCGCTATGTTTCTGAGTGCTCACTATGCTGGT GGTGATATGGTCCTGAAACTCAAACCAGGGGAGGGCTGGAAGAAAGTCCTTGGTCCTGTCTTTATGTATCTCAACACGGTGGCTGCCGACGACCACGGAG GAGGAAAGATCGACCCACTACTTTCCTTATGGGAAGATGCCAAGCAACAGATGAAGGTTGAGGTTGAAAGCTGGCCTTATGACTTCCCTGCTTCTGATGA TTTTCCAAAAGTCGATCAACGTGGGCGCGTCACCGGCAGATTCTTAATCCAGGACAGGCATTCAGTATTTATCTTCCGATCAGCAGCCAACTCACCACGT TTAAGAAAACTGCGTAAAAAGAAGTGGTTGAGTTGGGAGATAAACATAGACTGCAACATTCCGTGTGGTAGTGAAACAACCGTTATACCTGGAAATGGCG GGTATGTTGGATTAGCACCACCTGGAGAGGTAGGATCTTGGCAGACAGATGGTAAGGGGTACCAGTTTTGGAGTGAAGCAGATGAACAGGGTAACTTCTC AATCAGTAACATCAGGCCTGGAGAATACAACCTCTATGCATGGATTCCAGGATTCATTGGAGATTACAAATATGATTCTCCTATTACCATACATCCAGGG AGTGATATGGAGCTGGGAGATGTTGTGTACAAGCCTCCCAGAGATGGACCAACTGTGTGGGAGATTGGATTCCCAGACAGATCAGCTTCAGGATTCTATG TTCCTGATGCCAATCCTGTTTATTCCAACAAGCTTTTTCTGGGCCATCCTGACAGATTCAGACAGTACGGATTGTGGGAAAGATATACAGAATTGTACCC AGAGGAGGATTTGGTATACACTATTGGGGAGAGTGATTGGACCAAAGATTGGTTCTTTACCCACATTCCCAGAAAAACAAACGAGCGGGAGTACGAACCA ACAACATGGGAGATCAAGTTCGGGTTGGACAACAGACACAGTAATAGTGGTGGTGGTGGAGATAAGTACTACAAACTTCGAATCGCGCTCGCTGCTGCGA ATGTTGCGGAACTAGAGGTTCGGATCAATGATCCAGACATGGAAAAATCGGCCTTGTTCACAACAGGGGTGATAGGGCACGACAACACGATAGCGAGGCA TGGAATCCACGGCCTCTATAGGCTATACAGTGTTGATGTCCCAGCTTCTCTGCTTGTGCAAGATAACACATTTTACTTTACTCAGACTCAAACCAAGTCT CCTTCTTCAGCTCCTTTCCAAGGCGCCTTCCAGGGCGTTATGTATGATTATGTTCGTCTCGAATCACCGAGCGAGTAG
AA sequence Show only first row Show all	>Lus10005978 pacid=23175072 polypeptide=Lus10005978 locus=Lus10005978.g ID=Lus10005978.BGIv1.0 annot-version=v1.0 MSTLGVKLHIDNNHVVLDNGILKLTISKPQGIVTGITYNGITNLLEVRNDEIDRGYWDLVWSKEGSTGTKGTQERISGTEFSVIVENEGQVEVSFARTWD PSLEGQLPSLNIDKRFILLRNSSGFYSYAIFEHLPEWTPFHLPQVRIVFKLNKDNSDPAVGFWQITPSNEFRSGGLVKQNLTSHCGPINLAMFLSAHYAG GDMVLKLKPGEGWKKVLGPVFMYLNTVAADDHGGGKIDPLLSLWEDAKQQMKVEVESWPYDFPASDDFPKVDQRGRVTGRFLIQDRHSVFIFRSAANSPR LRKLRKKKWLSWEINIDCNIPCGSETTVIPGNGGYVGLAPPGEVGSWQTDGKGYQFWSEADEQGNFSISNIRPGEYNLYAWIPGFIGDYKYDSPITIHPG SDMELGDVVYKPPRDGPTVWEIGFPDRSASGFYVPDANPVYSNKLFLGHPDRFRQYGLWERYTELYPEEDLVYTIGESDWTKDWFFTHIPRKTNEREYEP TTWEIKFGLDNRHSNSGGGGDKYYKLRIALAAANVAELEVRINDPDMEKSALFTTGVIGHDNTIARHGIHGLYRLYSVDVPASLLVQDNTFYFTQTQTKS PSSAPFQGAFQGVMYDYVRLESPSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24430			Rhamnogalacturonate lyase fami...		Lus10005978 [exp]	0	1
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10000129 [exp]	1.0	0.9198
AT4G24430			Rhamnogalacturonate lyase fami...		Lus10030233 [exp]	2.4	0.8927
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Lus10041534 [exp]	5.5	0.8724
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10033680 [exp]	17.2	0.8463
AT5G65165		SDH2-3	succinate dehydrogenase 2-3 (....		Lus10028289 [exp]	18.0	0.8285
AT1G56140			Leucine-rich repeat transmembr...		Lus10031777 [exp]	20.5	0.8335
AT2G26450			Plant invertase/pectin methyle...		Lus10002976 [exp]	23.0	0.7502
AT1G77450	NAC	ANAC032	NAC domain containing protein ...		Lus10031937 [exp]	28.5	0.7911
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10036671 [exp]	33.2	0.7745
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10000111 [exp]	33.7	0.7822

Compare expression of checked genes

Lus10005978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.