Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09880 698 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09890 666 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G24430 660 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09910 655 / 0 Rhamnogalacturonate lyase family protein (.1) AT2G22620 593 / 0 Rhamnogalacturonate lyase family protein (.1.2) AT4G38030 586 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G37950 561 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G65210 202 / 3e-60 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030232 [exp] 992 / 0 AT1G09880 661 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10028212 [exp] 674 / 0 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10030233 [exp] 610 / 0 AT4G24430 776 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10039627 [exp] 580 / 0 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10004281 [exp] 567 / 0 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10000684 [exp] 563 / 0 AT1G09910 842 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10019231 [exp] 557 / 0 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10029552 [exp] 554 / 0 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10012720 [exp] 538 / 0 AT2G22620 706 / 0.0 Rhamnogalacturonate lyase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110100 [exp] 744 / 0 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 694 / 0 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110300 [exp] 678 / 0 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.005G151500 [exp] 674 / 0 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110000 [exp] 672 / 0 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.006G218500 [exp] 610 / 0 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.014G004500 [exp] 596 / 0 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.011G006200 [exp] 517 / 7e-176 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF06045 [flax] [poplar] Rhamnogal_lyase Rhamnogalacturonate lyase family
Representative CDS sequence Show only first row Show all	>Lus10005979 pacid=23175082 polypeptide=Lus10005979 locus=Lus10005979.g ID=Lus10005979.BGIv1.0 annot-version=v1.0 ATGGAACGTCGACGTCGGTTTGATGGCAGTTGCGGAATTCCCTCATCATCCTTTCTACTTCTACTACTCATCATGTGGTCATCGTCGCCGGCGAGAGGAT TAAATCACGGCGAGGGAAGGAGTCGGAAGCCGCCAGGGGTGGGGGTTGGACAGGAACCGTCGTCCTTCGAAGCTGTGAAGTTGCAGATTTGGGATCAATA TGTGGTGATAGGTAACGGGATAGTGGAGGTTAACTTAACCAACCCGGGTGGTCAGGTCGTCGGAGTTGGGTACAATGGCGTTGTCAATCTGCTCGAAGTT GTTAACCATGAAAATGACAGAGGGTACTGGGATGTGGTGTGGAAAGGAGATGGAATTGTCAAGAAAAAAGGTGCTCTTGACAGGCTAGAATGTGAAGAAA TGAGCATAATAACAGAAAAGGAGGAGCAAGTTGAAATTTCATTCACGAGAAAGTGGAATTCCTCACTTGAAGCCAAGCCCGTGCCTTTGAATATCGATAA AAGGTTCATAATGAGACAGGGATCGTCAGGATTCTACACATACGCCATTTACGAACATTTACAACAACATCCGGCTTTCGAGCTAGCCAACACTCGCCTC GTCATCAAGCCAAGAAAAGACATATTCCATGAGATGGCATTAAGTGACAAGAAGCAAAGAGAAATGCCACTACCTGACGATAGGTTGCCTCCAAGAGGCC GCACTCTTGACTACCCGGAAGCTGTCTTGCTTGTTGACCCTATTGAGCCCCAGTTTAAAGGACAGGTGGATGACAAGTATGAGTACTCAATGGAAAACAG AGACATAAAAGTTCATGGGTGGATGAGCAGAGAGCCATCTGTTGGGCTTTGGCAAATTACACCTAGTTCCGAGTTCAGGTCTGGCGGCCCACTCAAGCAG TTCCTTGCTTCCCATGTCGGCCCAACTAACCTTGCTGTGTTTCACAGTACACATTATACCGGGGCAGATATGATGATCCCTTTCAAAGCAAATGAGCCAT GGAAGAAAGTGTACGGCCCGGTTTTCATCTACCTCAACTCTCTTGACTCGCAAGATCATAAACAACCACAACAAGGCAAAATCACCCAGCTCTCTCTCTG GGAAGATGCCAAGAACCAGTCCGTGAACCAGTCTAAACAATGGCCCTACCAGTTCGTCGGTTCGCAAGACTACGCCCTTTCGAGCCAACGAGGTTCCATA ACAGGAAAACTCTCCGTTCTCGAACCGCAAATCAGTTATGACGGCAACAACCTTCTTCCGCCACTTGGTGCCTTTGTCGGTCTAGCCGCTCCGGGCAACC CTGGCTCGTGGCAGCTCGAATCCAAAAAATATCAGTTCTGGACCGAAGTTGAACCTGACGGGACGTTCAGGATCGACAATGTGATCGTTGGTCGGTACAA TCTGTACGGATTTGTCCCGAACTTTGTTGGAGAGTATAAGTATGATGCTCCCATTGATATAACTCCAGGTACAACAGTTGATGTTGGAGATGTTGTGTAC CAGCCTCCTAGAAACGGATCTACTCTGTGGGAGATTGGGATTCCTGATAGAACTGCAGCAGAGTTCTTCATTCCTGATGCAAATCCTGATTACATCAACC CGCTTTATCTTCACCAGGAAAAGTACAGACAATATGGATTGTGGGAAAGATACGCAGAATTATACCCTGAAGCAGATTTGGTGTACAATGTCCATACTGA TGACTATAAAAAAGACTGGTTCTTTGCTCAAGTTACTAGGAAAAAAGACAGCAATGGAACGTATCAAGGAACAACCTGGCAGGTTAAGTTCAAGCTAGAC GTGACATATCCACAAGTAAACTACACATTAAGGGTGGCACTAGCAACTGCAAACGGCGCTGAGCTTCAGGTCCGTGTAAACGAACCGAGCACCCTAATTC CACTGTTCACCACGGGAGAAATCGGCAAGGACAACACGATCGCCAGGCACGGAATCCACGGCGTTTACAGGCTATTCGATGTTACAGTTCCAGGGTCCTT GCTCGTGGAAGGAAACAACACGATTTTCCTGACGCAAGCGGTTGGCAAAGGACCTTTCTACGGTTTAATGTATGATTACATTCGTTTCGAAGGGCCGTTG TCGCCCAACCCGAGAGACCGGAATTGA
AA sequence Show only first row Show all	>Lus10005979 pacid=23175082 polypeptide=Lus10005979 locus=Lus10005979.g ID=Lus10005979.BGIv1.0 annot-version=v1.0 MERRRRFDGSCGIPSSSFLLLLLIMWSSSPARGLNHGEGRSRKPPGVGVGQEPSSFEAVKLQIWDQYVVIGNGIVEVNLTNPGGQVVGVGYNGVVNLLEV VNHENDRGYWDVVWKGDGIVKKKGALDRLECEEMSIITEKEEQVEISFTRKWNSSLEAKPVPLNIDKRFIMRQGSSGFYTYAIYEHLQQHPAFELANTRL VIKPRKDIFHEMALSDKKQREMPLPDDRLPPRGRTLDYPEAVLLVDPIEPQFKGQVDDKYEYSMENRDIKVHGWMSREPSVGLWQITPSSEFRSGGPLKQ FLASHVGPTNLAVFHSTHYTGADMMIPFKANEPWKKVYGPVFIYLNSLDSQDHKQPQQGKITQLSLWEDAKNQSVNQSKQWPYQFVGSQDYALSSQRGSI TGKLSVLEPQISYDGNNLLPPLGAFVGLAAPGNPGSWQLESKKYQFWTEVEPDGTFRIDNVIVGRYNLYGFVPNFVGEYKYDAPIDITPGTTVDVGDVVY QPPRNGSTLWEIGIPDRTAAEFFIPDANPDYINPLYLHQEKYRQYGLWERYAELYPEADLVYNVHTDDYKKDWFFAQVTRKKDSNGTYQGTTWQVKFKLD VTYPQVNYTLRVALATANGAELQVRVNEPSTLIPLFTTGEIGKDNTIARHGIHGVYRLFDVTVPGSLLVEGNNTIFLTQAVGKGPFYGLMYDYIRFEGPL SPNPRDRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10005979 [exp]	0	1
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031850 [exp]	3.5	0.9637
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10007497 [exp]	5.1	0.9616
AT2G32240			unknown protein		Lus10010464 [exp]	5.7	0.9247
AT2G31110		TBL40	TRICHOME BIREFRINGENCE-LIKE 40...		Lus10000466 [exp]	6.3	0.9519
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10038370 [exp]	6.3	0.9510
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035256 [exp]	6.5	0.9573
AT5G45370			nodulin MtN21 /EamA-like trans...		Lus10035693 [exp]	7.1	0.9471
AT5G01890			Leucine-rich receptor-like pro...		Lus10014174 [exp]	8.7	0.9335
AT1G79620			Leucine-rich repeat protein ki...		Lus10023849 [exp]	11.2	0.9417
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10039899 [exp]	11.6	0.9473

Compare expression of checked genes

Lus10005979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.