Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01230 295 / 1e-104 ORMDL family protein (.1) AT5G42000 273 / 1e-95 ORMDL family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030232 [exp] 308 / 1e-101 AT1G09880 661 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10023031 [exp] 258 / 1e-89 AT5G42000 270 / 1e-94 ORMDL family protein (.1.2) Lus10033219 [exp] 257 / 2e-89 AT5G42000 271 / 5e-95 ORMDL family protein (.1.2) Lus10003209 [exp] 186 / 1e-61 AT5G42000 194 / 2e-65 ORMDL family protein (.1.2) Lus10017314 [exp] 182 / 1e-59 AT5G42000 197 / 3e-66 ORMDL family protein (.1.2) Lus10031614 [exp] 76 / 2e-18 AT2G40190 81 / 1e-20 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G101000 [exp] 293 / 2e-103 AT1G01230 285 / 3e-100 ORMDL family protein (.1) Potri.002G174400 [exp] 285 / 2e-100 AT1G01230 254 / 3e-88 ORMDL family protein (.1) Potri.003G144600 [exp] 273 / 9e-96 AT5G42000 281 / 8e-99 ORMDL family protein (.1.2) Potri.001G086300 [exp] 263 / 9e-92 AT5G42000 273 / 1e-95 ORMDL family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04061 [flax] [poplar] ORMDL ORMDL family
Representative CDS sequence Show only first row Show all	>Lus10005980 pacid=23175084 polypeptide=Lus10005980 locus=Lus10005980.g ID=Lus10005980.BGIv1.0 annot-version=v1.0 ATGGCGAATCTATACGTCAAGGCGGTGCCTCCGGCGGATATGAACAAGAACACGGAGTGGTTCATGTACCCTGGCGTCTGGACTTCCTACATGCTCATCT TGTTCTTCGCTTGGCTCGTCGTTCTCTCCGTATCTGGTTGCTCTCCTGGCATGGCTTGGACCGTCGTTAATCTCGGTCACTTCGCTATGACTTACCATTT CTTTCACTGGAAGAAGGGAACTCCATTTGGTGATGATCAGGGGATCTATAATGGACTAACCTGGTGGGAGCAAATGGACAACGGAAAGCAGCTTACACGC AACAGAAAGTTCCTAACTGTGGTTCCTGTCGTCCTGTACTTGATAGCTTCACACACAACTGACTACGAACATCCGATGCTGTTTCTGAACACGATTGCGG TGCTAGTTCTTGTTGTGGCCAAGTTCCCGAATATGCACAAAGTACGTATCTTCGGAATCAACGGGGACATCTGA
AA sequence Show only first row Show all	>Lus10005980 pacid=23175084 polypeptide=Lus10005980 locus=Lus10005980.g ID=Lus10005980.BGIv1.0 annot-version=v1.0 MANLYVKAVPPADMNKNTEWFMYPGVWTSYMLILFFAWLVVLSVSGCSPGMAWTVVNLGHFAMTYHFFHWKKGTPFGDDQGIYNGLTWWEQMDNGKQLTR NRKFLTVVPVVLYLIASHTTDYEHPMLFLNTIAVLVLVVAKFPNMHKVRIFGINGDI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01230			ORMDL family protein (.1)		Lus10005980 [exp]	0	1
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Lus10024277 [exp]	2.2	0.8959
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	3.5	0.8869
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	4.2	0.8905
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	7.1	0.8828
AT4G32940		GAMMAVPE, GAMMA...	gamma vacuolar processing enzy...		Lus10024446 [exp]	8.9	0.8702
AT1G04555			unknown protein		Lus10023715 [exp]	9.0	0.8903
AT2G33590			NAD(P)-binding Rossmann-fold s...		Lus10024138 [exp]	10.4	0.8698
AT4G38090			Ribosomal protein S5 domain 2-...		Lus10035937 [exp]	11.0	0.8435
AT5G61670			unknown protein		Lus10016713 [exp]	11.4	0.8594
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10003932 [exp]	11.5	0.8745

Compare expression of checked genes

Lus10005980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.