Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01225 332 / 1e-115 NC domain-containing protein-related (.1) AT4G00905 318 / 7e-110 NC domain-containing protein-related (.1) AT5G06370 236 / 9e-78 NC domain-containing protein-related (.1) AT3G02700 210 / 1e-67 NC domain-containing protein-related (.1) AT5G16360 191 / 1e-59 NC domain-containing protein-related (.1) AT5G16330 172 / 8e-53 NC domain-containing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030231 [exp] 442 / 7e-159 AT1G01225 360 / 1e-126 NC domain-containing protein-related (.1) Lus10029402 [exp] 245 / 3e-81 AT5G06370 410 / 3e-146 NC domain-containing protein-related (.1) Lus10010962 [exp] 161 / 2e-48 AT3G02700 268 / 8e-91 NC domain-containing protein-related (.1) Lus10004198 [exp] 112 / 1e-06 AT5G06370 210 / 1e-68 NC domain-containing protein-related (.1) Lus10031362 [exp] 0 / 1 AT3G02700 69 / 6e-18 NC domain-containing protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G101300 [exp] 382 / 4e-135 AT1G01225 352 / 2e-123 NC domain-containing protein-related (.1) Potri.002G174700 [exp] 372 / 1e-131 AT1G01225 333 / 7e-116 NC domain-containing protein-related (.1) Potri.006G203300 [exp] 253 / 3e-84 AT5G06370 396 / 4e-141 NC domain-containing protein-related (.1) Potri.004G078700 [exp] 224 / 3e-73 AT3G02700 343 / 3e-120 NC domain-containing protein-related (.1) Potri.017G142300 [exp] 219 / 4e-71 AT3G02700 328 / 2e-114 NC domain-containing protein-related (.1) Potri.013G043100 [exp] 83 / 3e-19 AT5G06370 87 / 1e-20 NC domain-containing protein-related (.1) Potri.005G056300 [exp] 39 / 0.0009 AT5G16330 49 / 1e-07 NC domain-containing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF04970 [flax] [poplar] LRAT Lecithin retinol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10005981 pacid=23175064 polypeptide=Lus10005981 locus=Lus10005981.g ID=Lus10005981.BGIv1.0 annot-version=v1.0 ATGGGTCTGCTGAGTCACAGAGTAGAGAGAAGCGAAATCAAGCCTGGAGATCACATCTACACTTACAGAGCTGTCTTCACCTACTCCCACCATGGTATTT ACGTTGGGGGGAGCAAAGTTGTACACTTTACACCCAGAAGAAGGAATCTAGAATCCACAGAAGACTCAGATTCCTCATCTTATGACACAATGTCCAACAT TCCATCCACCTGCAAAATCTTTCCGGATTGCGGATTCAGGCAGCACGGCAGCGGAGTCGTCCTCACATGCCTAGACTGCTTCCTCGGCCGAGGCTCTCTC CACCTTTTCGAGTACCAGGTCCCGCCTCATGTGTTCATGGCCAAACTCCGGGGAGGAACCTGCACCACGGCAGCTTCCGACACCCCCGAGACAGTGGTCC ACCGCACAATGTACCTTCTCCAGAACGGGTTTGGCAACTACGACGTGTTCCAGAACAACTGCGAGGACTTTGCCCTCTACTGTAGGACGGGGCTCTTGAT AACCGACAAGCAAGGGGTTGGGAGGAGCGGCCAGGCTTCGTCGGTGATTGGCGCCCCTTTGGCTGCCATCCTTTCGTCGCCTCTCAAGCTGTTGATGCCG AGTCCCGTTGGTGTTGCCACGGTGACTGCAGGTATGTACTGCATGAGTAGGTATGCTACTGACATTGGTGTTAGGAGTGATGTGGTTAAGGTTTCTGTTG AAGATTTGGCCGTGAATCTTGGTTGGGGTGATCTTATAGAACAATTCGTGGATGCGAATGATGATGCTGTTGATGACGATTCCAGTCAGATGATTGCCAT ATGA
AA sequence Show only first row Show all	>Lus10005981 pacid=23175064 polypeptide=Lus10005981 locus=Lus10005981.g ID=Lus10005981.BGIv1.0 annot-version=v1.0 MGLLSHRVERSEIKPGDHIYTYRAVFTYSHHGIYVGGSKVVHFTPRRRNLESTEDSDSSSYDTMSNIPSTCKIFPDCGFRQHGSGVVLTCLDCFLGRGSL HLFEYQVPPHVFMAKLRGGTCTTAASDTPETVVHRTMYLLQNGFGNYDVFQNNCEDFALYCRTGLLITDKQGVGRSGQASSVIGAPLAAILSSPLKLLMP SPVGVATVTAGMYCMSRYATDIGVRSDVVKVSVEDLAVNLGWGDLIEQFVDANDDAVDDDSSQMIAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01225			NC domain-containing protein-r...		Lus10005981 [exp]	0	1
AT1G14020			O-fucosyltransferase family pr...		Lus10026624 [exp]	2.8	0.9267
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10042925 [exp]	3.5	0.9272
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10017304 [exp]	3.9	0.9207
AT4G23490			Protein of unknown function (D...		Lus10032293 [exp]	3.9	0.9186
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10032283 [exp]	8.2	0.9030
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10026338 [exp]	8.5	0.9095
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10003201 [exp]	9.5	0.9139
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10002181 [exp]	10.7	0.9015
AT5G11710			ENTH/VHS family protein (.1)		Lus10007460 [exp]	15.5	0.8942
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10002299 [exp]	16.1	0.9191

Compare expression of checked genes

Lus10005981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.