Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01220 1257 / 0 AtFKGP Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase, L-fucokinase/GDP-L-fucose pyrophosphorylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030230 [exp] 1712 / 0 AT1G01220 1599 / 0.0 Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase, L-fucokinase/GDP-L-fucose pyrophosphorylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G101400 [exp] 1401 / 0 AT1G01220 1566 / 0.0 Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase, L-fucokinase/GDP-L-fucose pyrophosphorylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0677 [flax] [poplar] GHMP_C PF08544 [flax] [poplar] GHMP_kinases_C GHMP kinases C terminal CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain CL0536 [flax] [poplar] HEXAPEP PF07959 [flax] [poplar] Fucokinase L-fucokinase
Representative CDS sequence Show only first row Show all	>Lus10005982 pacid=23175073 polypeptide=Lus10005982 locus=Lus10005982.g ID=Lus10005982.BGIv1.0 annot-version=v1.0 ATGGACGGCAGAAGAAGATCCACACGAGCTTCCTCCACCGTGAAACACGGAGCCGACTTGACCGCCGTCCTCCGCAAATCCTGGTATCATTTGAGGCTAT CCGTCAGGCACCCTTCCAGAGTCCCTACTTGGGACGCCATCGTACTCTCCATCCCCCGTCACTCTCGCAGTTCCCGACCCGGAGGGACAGCGGATCGGAT CCGGCGCCGCCACTCTCAATGCCATTCACGCCCTCGCCGAGCATTACCATCTCTTTCCGGAGGTAAAACTGTGGCCAATTTTCGAAATGAAAGATCTGGA TCTAATAAGGAAGACTCTGTCCCGCCAATGGTTGATTTCTTGGCCAAGAAGCACATACTACTGCTCCATGCTGGAGGTGACTCCAAAAGAGTACCATGGG CTAATCCTATGGGGAAAGTATTCATGCCTTTGCCTTATTTGGCCGCTGATGATCCAGATGGTCCCGTTCCGCTTCTATTTGATCATATACTGGCGATTGC CTCTTGTGCTAGGCAGGCTTTCAAGAATGAAGGTGGAGTGTTGACTATGACGGGGGATGTTCTTCCATGTTTTGATGCCTTCAGCTTGGTTATTCCGGAA GATGCATCTTGCATTGTTACCGTACCTATTACTCTTGATATTGCTGCCAATCATGGTGTTATTGTAGCATCCGACGCAGGGGTTGTTGCTGAAGATTACA CAGTTGATTTGGTTGACAATCTGTTACAAAAACCGAGTCAGGAAGAACTTGTTAAAAGTCATGCAATTTTAGATGATGGGAGAGCTTTGCTGGATACTGG AATCATTGCAGTTAGAGGCAAAGCATGGCGCGAGCTTGCTTCTCTTGCAGCATCCTGCCAACCTATGATCTCGGATCTTCTGAAAACCAGAAAAGAGATG AGTTTATATGAGGATCTTGTAGCTGCATGGGTACCTGCAAAGCATGACTGGCTGAGGGGACGCCCTCTTGGCGAAGAACTAATCAGAAGATTGGGAAAAC AAAGAATGTTCAGTTGTTGTGCGCATGACTTGTTGTTCCTACACTTCGGAACCTCGAGTGAAGTTTTGGATCACTTCAGCAGAGCCAGCTCAGAACTTGT TGGCCCAGCTCGGAACTTGTTGGGCGAAGGCATTTATGTTCAATTCCAGCTACCACTTCATCCGACATTGCTGCATCCGCTAATACAAATAGGTTCACTT TCAGTTGTTGTTGGGGTCAACATTCAACCAGACATCGTTGGAACAGTAATTGACTCGTTTCGATTCATGCTTCCGGATCGGCATTGTCTCTGGGAAGTTC CTTTAGTAGGATGCACGGGAAGAGTACTAGTGTACTGCGGTCTTCACGATAACCCGAAGAATTCGATTCTTGGTGATGGAACCTTTTGTGGGAAGCCATG GAGGAAACTGCTGGATGATTTAGGGATTTCGGAAACCGACCTTTGGTGCTCTTTGGGTGGCCAAGAGAAGTGTTTGTGGAATGCGAAAATATTCCCTATC GTTTCTTATTTTGAAATGCTCACACTGGCATCCTGGTTGATGGGTTTGAACGAAGATCAGCCAACTCCTAGCAGCCTACTCTCGTCGTGGAGAGGTTCCA GCCGTGTCAGTTTGGAGGAGCTGCATAGATCGATCGACTTCCCGAAAATGTGTCTCGGTTCAAGTAATCATCAAGCCGATCTTGCAGCGGGGATCGCTAA AGCTTGCATTGATCATGGCTTGCTTGGACGGAACTTGTCGCAGTTGTGTCAGGAAATTCTGCAGCAGGAAACTTCAGGGATGGAAACGTGCAAGGATTTC CTGAAATTATGTCCTGAACTGCAAATGCAGAATTCTAAGATTCTTCCTAGAAGCCGGGCGTACCAGGTGGAAGTTGATCTTCTTCGAGCTTGCAGAGATG ACACGTCAGCTTGCCAGTTGGATCACCAGGTGTGGGCTGCAGTTGCTGACGAAACTGCTTCAGCGGTCAGATATGGTTTCCGAGAACATCTCTTGGAGTG CCCCAATACCGAACTAGCTTCACCGAATCAAGATATCAATGTCGACCAGTCTTTCCGACCCAGAAGGGTGAAGGTCGAGTTACCGGTTCGTGTCGATTTC GTCGGAGGATGGAGCGACACTCCTCCATGGAGTTTGGAGCGCGCTGGCTGCGTTCTGAACATGGCAATAAGTCTCGAAGGCTGCCTTCCGATCGGCACCA TCATAGCGACAATAGAGCAAAAAGGAGTCCAGATCAACGATGACGTTGGCAACGAATTATACATACCTGCTCCGAATAAGATCTCCCCTCCTTTCGGAGG AGATGATCCGTTCCGGCTAGTTAAATCTGCCCTACTCGTTACCGGCATCCTCCACAAAAGATCCAACGGCTTGCACGTAACGACATGGGCTAAGGTACCC CGTGGTAGTGGCCTGGGAACTTCCAGCATTTTAGCTGCAGCAGTTGTCAAAGGACTTCTTCAGATAACCGACGGAGACGAAAGTAATGAGAACGTAGCTC GACTCGTTCTGGTACTTGAGCAGCTCATGGGTACGGGAGGCGGTTGGCAGGACCAAATCGGTGGGTTATACCCTGGCATCAAGTTCACTACCAGCTTCCC GGGGATACCGTTGCGGCTACAAGTCGTCCCTCTGCTGCCTTCTCCTCAGCTCTTGTCGGAGTTACAACAGCGATTGCTCGTGGTCTTCACCGGCCAAGTT CGTTTGGCTCATCAAGTCCTACAGAAGGTAGTAGTCAGATATCTCCGACGCGATAACCTCCTGATATCGAGCATCAAGAGACTGGCTGAGCTGGCAAAGA CGGGGAGGGAAGCTCTGATGAACTGTGACGTGGACGAGCTTGGGGAGATAATGCTCGAAGCGTGGAGGCTGCATCAGGAACTCGATCCTTACTGCAGTAA CGAATTCGTGGACGAGCTTTTTGCGTTCGCCAAGCCTTACTGCTGCGGGTACAAGCTTGTGGGAGCCGGAGGAGGCGGGTTTGCCTTGTTGCTTACGAAG GAAGCAACTTCGGCTAAGGAATTGAGGTGTAAGCTTGAAGAATCGAACTTTGACGTCAAAGTCTACAACTGGAGCATCTTCTTAGAGAATTGA
AA sequence Show only first row Show all	>Lus10005982 pacid=23175073 polypeptide=Lus10005982 locus=Lus10005982.g ID=Lus10005982.BGIv1.0 annot-version=v1.0 MDGRRRSTRASSTVKHGADLTAVLRKSWYHLRLSVRHPSRVPTWDAIVLSIPRHSRSSRPGGTADRIRRRHSQCHSRPRRALPSLSGGKTVANFRNERSG SNKEDSVPPMVDFLAKKHILLLHAGGDSKRVPWANPMGKVFMPLPYLAADDPDGPVPLLFDHILAIASCARQAFKNEGGVLTMTGDVLPCFDAFSLVIPE DASCIVTVPITLDIAANHGVIVASDAGVVAEDYTVDLVDNLLQKPSQEELVKSHAILDDGRALLDTGIIAVRGKAWRELASLAASCQPMISDLLKTRKEM SLYEDLVAAWVPAKHDWLRGRPLGEELIRRLGKQRMFSCCAHDLLFLHFGTSSEVLDHFSRASSELVGPARNLLGEGIYVQFQLPLHPTLLHPLIQIGSL SVVVGVNIQPDIVGTVIDSFRFMLPDRHCLWEVPLVGCTGRVLVYCGLHDNPKNSILGDGTFCGKPWRKLLDDLGISETDLWCSLGGQEKCLWNAKIFPI VSYFEMLTLASWLMGLNEDQPTPSSLLSSWRGSSRVSLEELHRSIDFPKMCLGSSNHQADLAAGIAKACIDHGLLGRNLSQLCQEILQQETSGMETCKDF LKLCPELQMQNSKILPRSRAYQVEVDLLRACRDDTSACQLDHQVWAAVADETASAVRYGFREHLLECPNTELASPNQDINVDQSFRPRRVKVELPVRVDF VGGWSDTPPWSLERAGCVLNMAISLEGCLPIGTIIATIEQKGVQINDDVGNELYIPAPNKISPPFGGDDPFRLVKSALLVTGILHKRSNGLHVTTWAKVP RGSGLGTSSILAAAVVKGLLQITDGDESNENVARLVLVLEQLMGTGGGWQDQIGGLYPGIKFTTSFPGIPLRLQVVPLLPSPQLLSELQQRLLVVFTGQV RLAHQVLQKVVVRYLRRDNLLISSIKRLAELAKTGREALMNCDVDELGEIMLEAWRLHQELDPYCSNEFVDELFAFAKPYCCGYKLVGAGGGGFALLLTK EATSAKELRCKLEESNFDVKVYNWSIFLEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Lus10005982 [exp]	0	1
AT4G38200			SEC7-like guanine nucleotide e...		Lus10001620 [exp]	2.2	0.9395
AT3G14810		MSL5	mechanosensitive channel of sm...		Lus10005555 [exp]	2.2	0.9196
AT2G25320			TRAF-like family protein (.1)		Lus10001490 [exp]	2.4	0.9370
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10035533 [exp]	3.5	0.9113
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007932 [exp]	4.0	0.9198
AT3G14940		ATPPC3	phosphoenolpyruvate carboxylas...		Lus10000065 [exp]	4.1	0.9039
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10012198 [exp]	5.5	0.8840
AT4G38200			SEC7-like guanine nucleotide e...		Lus10015863 [exp]	8.5	0.9300
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10006161 [exp]	9.6	0.8838
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013468 [exp]	10.5	0.8981

Compare expression of checked genes

Lus10005982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.