Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18750 522 / 7e-178 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT1G49160 507 / 1e-172 WNK7 Protein kinase superfamily protein (.1.2) AT5G41990 455 / 6e-152 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 432 / 2e-143 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1) AT3G04910 422 / 1e-137 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT3G48260 406 / 1e-133 WNK3 with no lysine (K) kinase 3 (.1) AT3G22420 400 / 1e-130 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT3G51630 394 / 2e-128 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G28080 390 / 9e-128 WNK9 Protein kinase superfamily protein (.1.2) AT5G58350 376 / 3e-121 ZIK2, WNK4 with no lysine (K) kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030229 [exp] 1171 / 0 AT3G18750 561 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10000334 [exp] 531 / 3e-177 AT5G41990 597 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10033225 [exp] 508 / 4e-172 AT5G41990 620 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10017318 [exp] 495 / 4e-167 AT5G41990 589 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10003215 [exp] 479 / 5e-158 AT5G41990 585 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10041947 [exp] 421 / 4e-138 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10020236 [exp] 423 / 7e-138 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10001789 [exp] 421 / 5e-137 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 410 / 5e-133 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G101500 [exp] 650 / 0 AT3G18750 564 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Potri.003G145300 [exp] 526 / 3e-179 AT5G41990 609 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.001G085500 [exp] 524 / 2e-178 AT5G41990 606 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.005G057300 [exp] 511 / 3e-172 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G087900 [exp] 441 / 5e-144 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.013G036300 [exp] 437 / 9e-143 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.008G037200 [exp] 428 / 8e-142 AT5G41990 429 / 8e-145 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.005G049800 [exp] 427 / 6e-139 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.012G086700 [exp] 416 / 1e-136 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.008G152300 [exp] 418 / 2e-135 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005983 pacid=23175066 polypeptide=Lus10005983 locus=Lus10005983.g ID=Lus10005983.BGIv1.0 annot-version=v1.0 ATGGCGAAGACAAAAGGCGGAGGTAAGCAGCATACCACCGACCCTGTCGAAGAAGAGACTGATGGAATTCAGAAAATGCGAGGGAAGGGCAAGTCGTTGG AAACTATGAACCTACTTGCCGAGCGGGCGATTACTGCTTCTAATAGGAAAGAAGCAGATAAGAAGAAGAAAAAACAGAAGATCTACGAGACCCCCGAGCC TTTTCCCCCGATTAGGATTCCCGTATGTCAGGATAGACCTCCATCCCCCGCTAGGGCTTCCACTGGTTCGTCTCACGCTTCAGCGAGCGTTGGAGCTGCA GCTGGGAGAGATGTAAGTTTTGCTCCCGCCACTAGTACACACGGTGGGGAGAGGGATGAGGAGGTCCACACTACTGGGGCTGGGGGAAACCTTTCCTGCA CTTGGCAGCTGGAGTCGGGGATAGAGGATAGAGGGCCGATTGCGACCAGTGTGATTCCTAGTTTGCGGCGCCGACAGATATGTTATAAGGCGTTTGATGA AGTAGATGGCATAGAAGTAGCATGGAACCGAGTGAAAATCGACGACGTGATGAGATCAGAAGAGGATCTGAAGAAGCTCTATTCAGAAGTACACTTGCTG AGATCACTGAAGCACGAGAGCATAATTTCGCTGTACGATTCGTGGGTGGATGAAAAGAAGAAGACGATTAATATGATCACTGAGCTCTTCACGTCTGGGA ATCTCAGACAGTACCGGACAAAGCACAAGAACGTCGACATGAAGGCAGTGAAATGGTGGGCGAGGCAAATCCTGAATGGACTGGCGTACCTACACAGCCA TAACCCACCAGTTATTCACAGAGATTTGAAGTGTGACAATATCTTCGTCAATGGGAATCATGGAGAAGTCAAGATCGGAGATCTAGGATTGGCCACTGTT ATGCAGCAGACCACTGCTAAAAGTGTCATTGGAACTCCGGAGTTCATGGCTCCGGAGCTATACGAAGAGCAATACAACGAGCTGGTAGATGTGTATTCCT TCGGGATGTGCATGTTGGAAATGGTTACTTTTGAGTATCCGTATAGCGAATGCAAGAATCCTGCTCAGATATTCAAGAAAGTTACCTCTGGTATCAAACC GGCTTCGCTTAGCAAGGTGAGAGATCCACAAGTGAAGGAGTTCATTGAGAAATGTCTGCTTCCTGCATCTCGCCGATTGTCAGCAAAGGAGCTCCTCCGA GATCCGTTCCTCCAACCCGGGGGTGCATTGTCACCACGTGATCCATTGCGCTTGCCTAAGCGTTGCGTACCGCCAATTATTGTGCCTACGAAGTCACCGA CATTGTCCATGGAGCTCAACAACGACTCGACCAAGCTCTCGTTCAGTACGTGTACGGGGGGCAACCTTCCGAGCCCGACACATCAGCCAGATATGGAGCT CAGAAGGGTGCACCGGAACAATGAGTTCAGACTGACAGGGATGAAAAATGAAGACAACTCGGTCTCGCTGAGCATGCGTATAGCCGATTCTCACGGTCAG GTGAAGAACATCCATTTCATCTTCTATCTCGATAGCGATACTGCAGTAGCTGTGGCGGCCGAGATGGTCGAGCAGCTCGAGTTAGCAGCAGAGCACGATG TGGCGTTCATAGCTGAGTTTATAGATTACTTGATAATGAAGCTTCATCCTGGTTGGAAGCCTTCATCTGATTGCGCTTCGAGCGGAGCGGTAACCCCCTT TGTCGAGTCCCCGGTGCATAGAAACAGCAGAAACTCGTCTCCATGGGGCTCGGTGCTAACCGGTACTCCACCTGAATCAGCCGTTGAGCTCCTCTCTCGG TTAAGCGCAGGACAATGTTCGGGAGGTGAAGTGGATGATCATCATTGTCAGCATCAGCAGCAATTCGATTACAACTCTTCTCCGAGCTTGGCTCCCATGG ACGATCAAGACTCTTCGAATGGATCTGTTGTCTCGGAGGGCGATGCTGAAGATTTGTCTACCTGTAAGGTCAATGCAGCAATTTTCGGTCTCCGTGGTTA CGAAAGCGATGGATGCATTCAAGGGTTAGCTACCGGATCTGATTCTGATTTGGAGCCGATGGACACTTATTTCGCCTACCAATGTGGGAAAACCGACAGT AACGGTAGTTGCGAATCCTTGACGAATCTGGATTTGGCATTCCCTAAATTGAGTCCAGCACCAGCAGCTAATAACGACAGAGATGCAGGCATGGAGCTGA AGGAGGAACTCGAAGCCATTGAGACACAGTACCGGAACTGGTTTCAGGAGCTTGCCCGAATGAAGGAGAAGGCAATGCAAGCTACAAGAGAGAGATGCTT GGCAAAGAAGAAACTCTGTGTTTGCTAA
AA sequence Show only first row Show all	>Lus10005983 pacid=23175066 polypeptide=Lus10005983 locus=Lus10005983.g ID=Lus10005983.BGIv1.0 annot-version=v1.0 MAKTKGGGKQHTTDPVEEETDGIQKMRGKGKSLETMNLLAERAITASNRKEADKKKKKQKIYETPEPFPPIRIPVCQDRPPSPARASTGSSHASASVGAA AGRDVSFAPATSTHGGERDEEVHTTGAGGNLSCTWQLESGIEDRGPIATSVIPSLRRRQICYKAFDEVDGIEVAWNRVKIDDVMRSEEDLKKLYSEVHLL RSLKHESIISLYDSWVDEKKKTINMITELFTSGNLRQYRTKHKNVDMKAVKWWARQILNGLAYLHSHNPPVIHRDLKCDNIFVNGNHGEVKIGDLGLATV MQQTTAKSVIGTPEFMAPELYEEQYNELVDVYSFGMCMLEMVTFEYPYSECKNPAQIFKKVTSGIKPASLSKVRDPQVKEFIEKCLLPASRRLSAKELLR DPFLQPGGALSPRDPLRLPKRCVPPIIVPTKSPTLSMELNNDSTKLSFSTCTGGNLPSPTHQPDMELRRVHRNNEFRLTGMKNEDNSVSLSMRIADSHGQ VKNIHFIFYLDSDTAVAVAAEMVEQLELAAEHDVAFIAEFIDYLIMKLHPGWKPSSDCASSGAVTPFVESPVHRNSRNSSPWGSVLTGTPPESAVELLSR LSAGQCSGGEVDDHHCQHQQQFDYNSSPSLAPMDDQDSSNGSVVSEGDAEDLSTCKVNAAIFGLRGYESDGCIQGLATGSDSDLEPMDTYFAYQCGKTDS NGSCESLTNLDLAFPKLSPAPAANNDRDAGMELKEELEAIETQYRNWFQELARMKEKAMQATRERCLAKKKLCVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10005983 [exp]	0	1
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10038219 [exp]	2.4	0.9516
AT3G26380			Melibiase family protein (.1)		Lus10006467 [exp]	7.5	0.9527
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008021 [exp]	7.9	0.9467
AT2G27770			Plant protein of unknown funct...		Lus10014372 [exp]	8.7	0.9416
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	9.4	0.9540
AT2G36780			UDP-Glycosyltransferase superf...		Lus10003322 [exp]	11.8	0.9513
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034467 [exp]	13.2	0.9482
AT5G63970			Copine (Calcium-dependent phos...		Lus10020885 [exp]	13.7	0.9404
AT3G03720		CAT4	cationic amino acid transporte...		Lus10005687 [exp]	15.9	0.9443
AT5G08560			transducin family protein / WD...		Lus10001046 [exp]	18.5	0.9406

Compare expression of checked genes

Lus10005983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.