Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46600 167 / 2e-54 Calcium-binding EF-hand family protein (.1) AT4G27280 105 / 3e-30 Calcium-binding EF-hand family protein (.1) AT5G54490 104 / 7e-30 PBP1 pinoid-binding protein 1 (.1) AT4G14640 52 / 3e-09 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT3G22930 49 / 5e-08 CML11 calmodulin-like 11 (.1) AT2G27030 48 / 5e-08 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT5G37780 48 / 6e-08 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 48 / 6e-08 ACAM-4, CAM4 calmodulin 4 (.1.2) AT2G41110 47 / 2e-07 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT3G56800 47 / 2e-07 ACAM-3, CAM3 calmodulin 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030227 [exp] 245 / 8e-86 AT2G46600 167 / 1e-54 Calcium-binding EF-hand family protein (.1) Lus10018511 [exp] 128 / 2e-39 AT4G27280 140 / 2e-44 Calcium-binding EF-hand family protein (.1) Lus10039724 [exp] 126 / 9e-39 AT4G27280 139 / 1e-43 Calcium-binding EF-hand family protein (.1) Lus10031588 [exp] 124 / 8e-38 AT4G27280 133 / 3e-41 Calcium-binding EF-hand family protein (.1) Lus10033753 [exp] 124 / 9e-38 AT4G27280 133 / 3e-41 Calcium-binding EF-hand family protein (.1) Lus10036734 [exp] 99 / 5e-28 AT5G54490 107 / 2e-31 pinoid-binding protein 1 (.1) Lus10041179 [exp] 50 / 1e-08 AT4G14640 174 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10039391 [exp] 50 / 1e-08 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10001775 [exp] 50 / 3e-08 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G101700 [exp] 174 / 1e-57 AT2G46600 181 / 3e-60 Calcium-binding EF-hand family protein (.1) Potri.002G174900 [exp] 167 / 1e-54 AT2G46600 174 / 4e-57 Calcium-binding EF-hand family protein (.1) Potri.013G151000 [exp] 130 / 2e-40 AT5G54490 147 / 7e-47 pinoid-binding protein 1 (.1) Potri.011G039500 [exp] 120 / 1e-36 AT4G27280 127 / 6e-39 Calcium-binding EF-hand family protein (.1) Potri.011G039600 [exp] 120 / 1e-36 AT4G27280 127 / 6e-39 Calcium-binding EF-hand family protein (.1) Potri.004G027200 [exp] 120 / 2e-36 AT5G54490 127 / 3e-39 pinoid-binding protein 1 (.1) Potri.011G129100 [exp] 116 / 9e-35 AT4G27280 124 / 5e-38 Calcium-binding EF-hand family protein (.1) Potri.019G120600 [exp] 115 / 1e-34 AT5G54490 147 / 6e-47 pinoid-binding protein 1 (.1) Potri.001G412077 [exp] 114 / 5e-34 AT4G27280 117 / 4e-35 Calcium-binding EF-hand family protein (.1) Potri.011G125300 [exp] 113 / 1e-33 AT5G54490 122 / 5e-37 pinoid-binding protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005985 pacid=23175058 polypeptide=Lus10005985 locus=Lus10005985.g ID=Lus10005985.BGIv1.0 annot-version=v1.0 ATGGAAAACAGTCAACCAATCAGCAGTCACCAGTACGAGGACTTACTCCCGGTGATGGCGGAGAAGCTGGAAGTGGAAGACTTCGTCAAAGAGCTATGCG GCGGATTCCAGCTGCTGTCCGACGGGGAACAGGCGGTGATTACGCCGGAGAGTCTGAGGAGGAACTCAGGGTTCCTAGGGATGGAAGGAATGACTAAGGA AGACGCGGAGGCTATGGTGAAAGAAGGAGATCTAGACGGCGACGGCGCGCTTAACGAGACGGAGTTCTGTATTCTGATGGTTAGGCTGAGCCCTGGGATG ATGGATGACGCCGAAGCTTGGCTTGAGAAGGCAATTGATTTCGAGCTCCGCAGGTCTTCCCTCTGA
AA sequence Show only first row Show all	>Lus10005985 pacid=23175058 polypeptide=Lus10005985 locus=Lus10005985.g ID=Lus10005985.BGIv1.0 annot-version=v1.0 MENSQPISSHQYEDLLPVMAEKLEVEDFVKELCGGFQLLSDGEQAVITPESLRRNSGFLGMEGMTKEDAEAMVKEGDLDGDGALNETEFCILMVRLSPGM MDDAEAWLEKAIDFELRRSSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46600			Calcium-binding EF-hand family...		Lus10005985 [exp]	0	1
AT2G46600			Calcium-binding EF-hand family...		Lus10030227 [exp]	1.0	0.9984
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	2.8	0.9677
AT3G57330		ACA11	autoinhibited Ca2+-ATPase 11, ...		Lus10042040 [exp]	2.8	0.9567
AT1G13520			Protein of unknown function (D...		Lus10035080 [exp]	3.0	0.9650
AT5G23950			Calcium-dependent lipid-bindin...		Lus10027502 [exp]	5.5	0.9485
AT5G67640			unknown protein		Lus10011552 [exp]	8.5	0.9353
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10023822 [exp]	9.9	0.9513
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10016537 [exp]	10.4	0.9488
AT3G26380			Melibiase family protein (.1)		Lus10006467 [exp]	10.7	0.9566
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10018231 [exp]	11.2	0.9421

Compare expression of checked genes

Lus10005985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.