Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61860 274 / 4e-93 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G46610 256 / 4e-86 RS31a, At-RS31a arginine/serine-rich splicing factor 31a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G25500 227 / 3e-73 ATRSP40, AT-SRP40, ATRSP35, RS40, At-RS40 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) AT5G52040 207 / 2e-65 ATRSP41, RS41, At-RS41 arginine/serine-rich splicing factor 41, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G02430 64 / 2e-12 SR34b, At-SR34b Serine/Arginine-Rich Protein Splicing Factor 34b, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G02840 63 / 2e-11 ATSRP34, SR1, SR34, At-SR34 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT2G37340 60 / 2e-10 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT3G53500 60 / 2e-10 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT3G49430 59 / 5e-10 SRP34A, SR34a, At-SR34a Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) AT1G09140 58 / 5e-10 ATSRP30.1, ATSRP30.2, SR30, At-SR30 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030226 [exp] 408 / 7e-146 AT3G61860 320 / 8e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015005 [exp] 202 / 7e-60 AT5G52030 461 / 5e-156 TraB family protein (.1.2) Lus10038883 [exp] 145 / 1e-41 AT4G25500 206 / 7e-64 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Lus10007869 [exp] 67 / 6e-13 AT1G02840 308 / 1e-105 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10003606 [exp] 67 / 9e-13 AT1G02840 299 / 5e-102 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10008218 [exp] 66 / 2e-12 AT1G02840 228 / 3e-73 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10015564 [exp] 66 / 2e-12 AT3G49430 324 / 6e-112 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10032940 [exp] 65 / 3e-12 AT3G49430 328 / 7e-113 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10011924 [exp] 60 / 3e-10 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G101800 [exp] 315 / 3e-109 AT3G61860 319 / 9e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G175000 [exp] 313 / 7e-109 AT3G61860 291 / 8e-100 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G135800 [exp] 241 / 3e-78 AT4G25500 322 / 5e-108 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.012G133600 [exp] 229 / 4e-74 AT4G25500 316 / 2e-106 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.002G153600 [exp] 215 / 6e-70 AT4G25500 264 / 7e-88 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.014G076600 [exp] 212 / 7e-69 AT4G25500 255 / 3e-84 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.015G004600 [exp] 68 / 2e-13 AT3G49430 303 / 1e-103 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.002G205025 [exp] 65 / 4e-12 AT1G02840 272 / 1e-90 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.014G129900 [exp] 64 / 1e-11 AT1G02840 272 / 5e-91 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.006G215200 [exp] 60 / 1e-10 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10005986 pacid=23175060 polypeptide=Lus10005986 locus=Lus10005986.g ID=Lus10005986.BGIv1.0 annot-version=v1.0 ATGGCGCGACCGATTTTCGTCGGAAACTTTGAGTTTGAGACTCGGCAGACTGAGTTGGAGCGCTGTTTCAGCAAGTATGGAAGGGTGGAGCGAGTGGACA TGAAATCTGGTTTTGCTTTTGTCTATTTTGAGGATGACCGTGATGCTGCCGATGCCATCAGGGGTCTTGACCAGATTCCGTTCGGTTACAACAGGCGTAG GCTGTCCGTGGAGTGGGCAAGGGGGGAGCGTGGCAGACAGCAAAAGGAAGGATCGAGATACCAGCGGCCTACGAAAACTCTGTTTGTGATCAACTTCGAT CCAGTTAGTACAAGAGTTGACGACATCAAAAGGCACTTTGAACCTTATGGAGAAGTTATGAATGTCAGAATCCGGCGCAACTTTGCTTTCGTGCAGTTTG AGACGCAAGAAGATGCTACCAAGGCCCTTGAAAGCGCACACTTGAGCAAGATACTGGACAGGGTTGTCTCGGTTGAGTATGCATTGAGGGATGATGACGC TAGCCCTAGAAGGGGAAGCTATAGGTCGCCTAGTCCTGTATATCGCAGGCGACCAAGTCCTGATTATGGCCGACCCCACAGCCCAGTCTATGATAAGTAC AACGGGGCAGCAGCATATGATCGCCGTCCAAGTCCTGATTACGGCAGGAGCAGAAGTCCATACCGCGGCAGGAACTACCGGAGGTATACCCCCTCTGCTA AACCTTGGTTCATTGAGGTACTGCTATATAAAGACTAA
AA sequence Show only first row Show all	>Lus10005986 pacid=23175060 polypeptide=Lus10005986 locus=Lus10005986.g ID=Lus10005986.BGIv1.0 annot-version=v1.0 MARPIFVGNFEFETRQTELERCFSKYGRVERVDMKSGFAFVYFEDDRDAADAIRGLDQIPFGYNRRRLSVEWARGERGRQQKEGSRYQRPTKTLFVINFD PVSTRVDDIKRHFEPYGEVMNVRIRRNFAFVQFETQEDATKALESAHLSKILDRVVSVEYALRDDDASPRRGSYRSPSPVYRRRPSPDYGRPHSPVYDKY NGAAAYDRRPSPDYGRSRSPYRGRNYRRYTPSAKPWFIEVLLYKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Lus10005986 [exp]	0	1
AT3G47490			HNH endonuclease (.1.2.3)		Lus10034462 [exp]	4.9	0.8201
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10013120 [exp]	7.1	0.8122
AT5G48545		HINT3	histidine triad nucleotide-bin...		Lus10038220 [exp]	8.8	0.8188
AT2G41200			unknown protein		Lus10032687 [exp]	9.2	0.8220
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10012532 [exp]	11.0	0.7956
AT1G55805			BolA-like family protein (.1)		Lus10002318 [exp]	14.7	0.7991
AT3G02300			Regulator of chromosome conden...		Lus10030712 [exp]	14.9	0.7870
AT2G41200			unknown protein		Lus10008568 [exp]	16.9	0.8152
AT5G18610			Protein kinase superfamily pro...		Lus10041426 [exp]	22.7	0.7883
AT1G05170			Galactosyltransferase family p...		Lus10020042 [exp]	25.8	0.7683

Compare expression of checked genes

Lus10005986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.