Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08510 602 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 388 / 7e-130 MEF21 mitochondrial editing factor 21 (.1) AT5G56310 385 / 9e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G33350 376 / 3e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 380 / 7e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 374 / 2e-123 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 375 / 5e-123 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G44230 373 / 1e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59200 365 / 9e-121 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 366 / 1e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030225 [exp] 699 / 0 AT5G08510 472 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 399 / 4e-133 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030125 [exp] 380 / 2e-127 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10014298 [exp] 384 / 6e-127 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 379 / 3e-125 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 379 / 5e-124 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 373 / 5e-123 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027311 [exp] 368 / 2e-122 AT1G33350 621 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010909 [exp] 365 / 1e-119 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G175900 [exp] 697 / 0 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 414 / 9e-139 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 405 / 2e-135 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G035900 [exp] 389 / 5e-130 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.005G119000 [exp] 387 / 3e-128 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 384 / 4e-127 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 375 / 6e-125 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G217600 [exp] 370 / 5e-123 AT1G05750 548 / 0.0 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G089400 [exp] 369 / 8e-123 AT1G33350 639 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G106500 [exp] 370 / 3e-122 AT2G29760 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10005987 pacid=23175068 polypeptide=Lus10005987 locus=Lus10005987.g ID=Lus10005987.BGIv1.0 annot-version=v1.0 ATGAAGCGGCTGAAACAAATTCATGCTCACACCATAAAGAACAACACCGACCAGGAAGCCCTGATCGTGAAGCTCATCCAATTCCCCAACATTCGTTACG CCCGCAAAGTGTTCGACGAAATTCCCAACCGACATGTTTTCCTCTACAACAAGCTCATTCAAGCCTACGCTTCCAACAACCAACCCCACAAATCTCTCAG TCTATTCTCTCAAATCTCCTGTAGGCCAAACGAACACACTTTCATCTTCGTCTTCCAAGCATGCGCTTCCCTTCCTTCTTCTCCAGTTGCCGCCCAAGTC GTCCATTCCCGCTTCGTCAAATCCGGATTCGCCTCCGATTTCATCGCCTGCACCGCTTTACTCAACGCCTACGCGAAATCGAGGTTGATGCGGTTTGCAC GCCAACTGTTTGACGAAATGCCCGTGAGAGACGTCCCTACTTGGAACGCCATGATTGCAGGGTATGGCAAATGCGGGGATATGGAGGCGGCGCTGGAGGT GTTTGATAAAATGCCGAGGAAGAGTGTGGTTTCCTGGACTGCGCTGATATCTGGTTACTCTCAGAATGGATTGTACGCCAAGGCATTGGAGTTATTTCTG AAAATGGAGGAGGATGGTACAGTGAGGCCGAATGAAGTAACGGTCGCTAGTGTTCTTCCGGCTTGTGCGAATTTAGGAGCTTTGGAATTGGGGGAGAGGA TTGGTGATTACGCTAGAGGGAATGGATTGCTGAAGAATGTGTTTGTCAGCAATGCTTTGCTGGAAATGTATTCCAGGTGCGGTAAGATTCATGTTGCCAG GCGTGTGTTTCATGAGATGGGAAATAGGAGGAATCTCTGTTCGTGGAACTCGATGATCATGGGCTTGGCTGTGCATGGCGGAAGCAATGACGCTTTGAGT CTGTATGACGAAATGCTGAGAGAAGGAACTGCACCTGACGACGTAACATTCGTAGCAGTTCTACTAGCCTGCACGCACGGCGGCATGGTCAGCAAAGGCC AAAAACTGCTTGAATCAATGGAGGCCGATTTCGGAATCTCCCCCAAGCTGGAGCATTACGGGTGCATGGTGGATCTCCTCGGCCGAGCCGGACAGCTGCA ACAAGCTTACGATCTAATCAACAGTATGCCGATGAGACCGGATTCTGTGATATGGGGAACACTGCTGGGCGCCTGCAGCTTCCACAGCAATGTCGAGCTC GCAGAGGTATCGGCAGAGGCTCTCTTCGAGCTCGAGCCGTGGAATCCGGGCAACTACGTGATTCTTTCGAATGTGTATGCATCGGCTGGCAGATGGGACG GAGTTGCGAGGCTTAGGAAGATGATGAGAGGCGGGAAGATTACGAAAGCTGCTGGGTATAGCTTTGTTGAGGTTGAAGGAAGAGTGAACAAGTTTGTGGT TGGTGATGGATTGCATCCGAGAAGTGATGAAGTTTATGGATTGTTACAGGTGGTTTATTCCGAGATCCGGAAACAGAAACATGAACTTGAAGAACTGTGC TTAAGTTAA
AA sequence Show only first row Show all	>Lus10005987 pacid=23175068 polypeptide=Lus10005987 locus=Lus10005987.g ID=Lus10005987.BGIv1.0 annot-version=v1.0 MKRLKQIHAHTIKNNTDQEALIVKLIQFPNIRYARKVFDEIPNRHVFLYNKLIQAYASNNQPHKSLSLFSQISCRPNEHTFIFVFQACASLPSSPVAAQV VHSRFVKSGFASDFIACTALLNAYAKSRLMRFARQLFDEMPVRDVPTWNAMIAGYGKCGDMEAALEVFDKMPRKSVVSWTALISGYSQNGLYAKALELFL KMEEDGTVRPNEVTVASVLPACANLGALELGERIGDYARGNGLLKNVFVSNALLEMYSRCGKIHVARRVFHEMGNRRNLCSWNSMIMGLAVHGGSNDALS LYDEMLREGTAPDDVTFVAVLLACTHGGMVSKGQKLLESMEADFGISPKLEHYGCMVDLLGRAGQLQQAYDLINSMPMRPDSVIWGTLLGACSFHSNVEL AEVSAEALFELEPWNPGNYVILSNVYASAGRWDGVARLRKMMRGGKITKAAGYSFVEVEGRVNKFVVGDGLHPRSDEVYGLLQVVYSEIRKQKHELEELC LS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10005987 [exp]	0	1
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10038839 [exp]	2.8	0.8536
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018393 [exp]	3.2	0.8693
AT1G43170		RPL3A, ARP1, EM...	embryo defective 2207, ribosom...		Lus10006181 [exp]	4.2	0.8470
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10028593 [exp]	5.9	0.8390
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10025009 [exp]	8.1	0.8380
AT1G50270			Pentatricopeptide repeat (PPR)...		Lus10023251 [exp]	9.2	0.8008
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10003563 [exp]	9.4	0.8415
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	9.8	0.8320
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	10.2	0.8036
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10009070 [exp]	13.1	0.8266

Compare expression of checked genes

Lus10005987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.