Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76390 236 / 4e-65 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G20780 224 / 2e-61 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G68940 184 / 2e-47 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT3G46510 127 / 8e-30 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G42340 110 / 1e-24 PUB15 Plant U-Box 15 (.1) AT2G28830 105 / 6e-23 AtPUB12 PLANT U-BOX 12 (.1) AT5G67340 94 / 3e-19 ARM repeat superfamily protein (.1) AT1G23030 92 / 8e-19 PUB11 ARM repeat superfamily protein (.1) AT1G29340 92 / 9e-19 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT1G60190 85 / 1e-16 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030224 [exp] 1241 / 0 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10039402 [exp] 339 / 1e-99 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10034132 [exp] 291 / 9e-85 AT1G76390 162 / 5e-41 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10043453 [exp] 288 / 1e-83 AT1G76390 158 / 1e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013216 [exp] 276 / 5e-78 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013050 [exp] 166 / 2e-41 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10018246 [exp] 158 / 3e-39 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10040659 [exp] 156 / 1e-38 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10029113 [exp] 112 / 9e-25 AT1G68940 572 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G175800 [exp] 1283 / 0 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.014G102000 [exp] 1277 / 0 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 1018 / 0 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G079200 [exp] 387 / 3e-118 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.003G201000 [exp] 321 / 2e-95 AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.001G024600 [exp] 312 / 5e-92 AT1G20780 107 / 1e-23 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.005G253400 [exp] 280 / 9e-81 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.001G069501 [exp] 277 / 2e-78 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.002G007800 [exp] 273 / 4e-78 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G136500 [exp] 233 / 4e-63 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10005988 pacid=23175062 polypeptide=Lus10005988 locus=Lus10005988.g ID=Lus10005988.BGIv1.0 annot-version=v1.0 ATGGCAATGGAAGCCATGACTACTGCCTCCTTCCCAGGTTCGGAGCTTCTTTCCCAGGTTGTTGATGGAATGGCTGAGATCATTCATTCCGCCAAAGGTG TTATCCTGAAAAGGGGATGTTTTCAGGAACTCGCTGCCTACCTGGAAAGAATCGTCCCTGTTTTAAAAGAATTGAACACACAGAACAACGTTGCAGGCAA TTCAGAGAGCTTGACTAACGCTGTTGAAATTCTGAACCGTGAAGTCAAGGCTGCGAAGCTACTGACTGCGGATTGCACAACGAAGAACAAGGTCTATCTC CTCATAAACTGCAGAACTATAACCAAGCATTTGCAGCAGATTACAAGAGAAATTAGTAGAGCTATAAGTCTTATTCCTTTGGCTTCTCTGGATATTTCGT CTAGTGTAATTGAGGACATTACGGATCTGTGTGTTCAAATGCGAAGAGCCGAGTTTAAGGCAGCAGTAGCAGAAGAAGAGATATTGGAGAAGATTGAGTC AGGTATACAAGAGAGGAAAGTTGACCGTTCTTACGCCAACAACTTAGTTGCTCAGATAGCACGGGCTGTCGGGATTTCGAACGAGCAGTCTGCAATGAAG AAAGAACTCGAGGAATTCAAGGAAGAGGTTGAGAATACCAGACTAAGGAAGGATCAGGCTGAAGCTATACAGATGGATCAGATAATTGCTTTGCTCGAAA GGGCAGACGCTGCATCGTCTCCTCGAGAGAAAGAGTGGAAATACTTCACCAAGAGGAAGTCTTTGGGTAGTCAACCGTTGGAGCCTCTCCAGTCATTCTA CTGTCCAGTTACAAGGGATGTTATGGTTGATCCTGTGGAGACTTCTTCAGGACAGACATTCGAGAGAAGTGCCATTGAGAAGTGGATGGCTGAGGGAAGC AACTTGTGTCCTTTGACTCAGATCGCTCTAGACTCGTCGATTCTTCGTCCGAACAAAACTCTGAGGCAATCAATAGAAGAATGGAAAGACAGGAACACAA TGATCACAATTGCTACAATGAAGTCGAAACTTGAATCTGATGAAGAGGAAGAAGTTCTGCAAAGTCTACGGCAGCTGAAAGATCTCTGCCAACAAAATGA TCAGCATCGGCAATGGATTATACTTGAGAACTATATTCCTGTCCTTATTCAACTGCTTTGTTCGAAAAATCGTGATGTGAGGAATAATACTCTTGCCATC CTCTGCTATCTGGCGAAAGACAGTGATGATGCCAAGGAAAGAGTTGAAAATGTTAATGATGCAATTGACTTGATTGGTCGATCTCTTGGACGTCGTACTG GGGAAAGAAAGTTGGCAGTGGCCTTACTGTTAGAACTGTCAAAAAGCAATAAAGTGAGGGAGTTCATTGGGAAGGTACAAGGTTGTATACTCCTACTTGT GACCATGTCAAGAAGTGATGACGATGAAGCTGCCACAGATGCACAACAGTTACTAGACAATCTATCCTTCTCTGATCATAACATCATACAAATGGCAAAA GCAAACTGTTTTAGACATTTTCTGCGGCGACTATCTACCGGGCCGGACGAGGCGAAAATCATGATGGCATCAACTTTGGCAGAAACGGAGTTAACTGATC ACAACAAGGCATCTTTGTTTAACGGAGAAGTACTCAGTTCCCTTCTTCACTTGGCCAAAAGTGATGATATTCAGATGAAAACAGTGGCCGTTAGAGCTCT GCAGAACCTCTCCAGCTTACCAGGAAATGCCCTACAGATGATCAAACAAGGGATAGTACGGCCGTTACTTGAAATTCTCTTCCGCCACAGTTCGCCATCC TCGAGTTTGCGGGAGCAGGTTGCGATCATTATCATGCACCTTGCAAGATCTACAGCGTCTCAGCAGGAACCCGGCCCGGAACCGATTTCGATGCTGGAAA CTGAAGAAGACACGTTCAGGCTCTTCTCTTTAGTCAACCTGACAGCAGCTGGAGTGCAGGAAAGAATCCTGCAAACCTTCCAGGACTTGTGCCAGTCTCC CTCGGCATCATTTATCAAAGCTAAGTTAATTGAGTCGTCTGCGGTGCATGTGTTAGTTCAGCTGTGTGAGCATGAGAACTCGAATGTTCGATCAAATGCC GTGAAGCTGTTCTGCTTATTAGTAAAAGACGGTGATGTAGCAATCATCATGGAACACATTGACAAGAAGTATCTCGAAACCTTGGTCGGGATCATCCAGA AATCAGACGACACGGAAGAAGTTGCTTCCTCGATAAGCATCATTTCGTACCTTCCGGAGGAAGGTCAGATCACAGAATGGCTACTCAGCGCCGGAGCACT CGACAAAATCTCCAAATTCCTCCGAGACGGCACAAAGAACAACAACAAACTGATCGAGAACGCAGCACGCGCCATGACTCGTTTCGTTTCGCCAACGAAC CTCGAAAGGCAGAAGAAAGCAGCAGAGAACGGAGTTATTCCTCTACTGGTAAAGCTGCTACTTGACTCCAGCAGCAGTACCTTGACAAAGAAGTATGCTT CCGTTTGTCTCGATCGATTATCGCAGAGCTCGCCTTCGTTGACCAAGCCGTTGAAAAGACACAGGGGGATATGGTGCTTCTCCGCCCAACATGAACCGGC CTGCATTGTCCACGGCGGAATCTGTACCGTGGAATCTTCGTTCTGCCTCGTGGAGGCCGATGCTGTACGGCCACTCGTGAGGGTGCTCGAGGAATCGGAC CCTGAAGTCTGCGAGGCCTCATTGGGCGCGCTGTTGACTCTGATCGACGCTGAAAGGCTTCAGAGCGGCAGCAAAGTTCTGTCAGAAGCGGAAGCGATTC TCCCTATGATAAAGTTCCTGTCTTGGTCCGATTACCCTAACTTGCAGGAGAAGGCATTGTTTGCTCTGGAGAGGATTTTTCGGATGCCGGAGTTTAAACA GAAGTACAGCGGGGCTGCTCAGATGCATTTGGTTGACTTGACGCAGAGAGGTAGTAACCAAATGAAGTCTCTTTCTGCGAGAATCCTGGCTCACATGAAT GTTCTCCATGATCAATCGTCTTACTTCTGA
AA sequence Show only first row Show all	>Lus10005988 pacid=23175062 polypeptide=Lus10005988 locus=Lus10005988.g ID=Lus10005988.BGIv1.0 annot-version=v1.0 MAMEAMTTASFPGSELLSQVVDGMAEIIHSAKGVILKRGCFQELAAYLERIVPVLKELNTQNNVAGNSESLTNAVEILNREVKAAKLLTADCTTKNKVYL LINCRTITKHLQQITREISRAISLIPLASLDISSSVIEDITDLCVQMRRAEFKAAVAEEEILEKIESGIQERKVDRSYANNLVAQIARAVGISNEQSAMK KELEEFKEEVENTRLRKDQAEAIQMDQIIALLERADAASSPREKEWKYFTKRKSLGSQPLEPLQSFYCPVTRDVMVDPVETSSGQTFERSAIEKWMAEGS NLCPLTQIALDSSILRPNKTLRQSIEEWKDRNTMITIATMKSKLESDEEEEVLQSLRQLKDLCQQNDQHRQWIILENYIPVLIQLLCSKNRDVRNNTLAI LCYLAKDSDDAKERVENVNDAIDLIGRSLGRRTGERKLAVALLLELSKSNKVREFIGKVQGCILLLVTMSRSDDDEAATDAQQLLDNLSFSDHNIIQMAK ANCFRHFLRRLSTGPDEAKIMMASTLAETELTDHNKASLFNGEVLSSLLHLAKSDDIQMKTVAVRALQNLSSLPGNALQMIKQGIVRPLLEILFRHSSPS SSLREQVAIIIMHLARSTASQQEPGPEPISMLETEEDTFRLFSLVNLTAAGVQERILQTFQDLCQSPSASFIKAKLIESSAVHVLVQLCEHENSNVRSNA VKLFCLLVKDGDVAIIMEHIDKKYLETLVGIIQKSDDTEEVASSISIISYLPEEGQITEWLLSAGALDKISKFLRDGTKNNNKLIENAARAMTRFVSPTN LERQKKAAENGVIPLLVKLLLDSSSSTLTKKYASVCLDRLSQSSPSLTKPLKRHRGIWCFSAQHEPACIVHGGICTVESSFCLVEADAVRPLVRVLEESD PEVCEASLGALLTLIDAERLQSGSKVLSEAEAILPMIKFLSWSDYPNLQEKALFALERIFRMPEFKQKYSGAAQMHLVDLTQRGSNQMKSLSARILAHMN VLHDQSSYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10005988 [exp]	0	1
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002096 [exp]	2.4	0.8499
AT5G66630		DAR5	DA1-related protein 5 (.1)		Lus10033300 [exp]	4.5	0.8175
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10012030 [exp]	5.9	0.8342
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10017796 [exp]	6.7	0.8191
AT5G47860			Protein of unknown function (D...		Lus10008591 [exp]	8.3	0.8569
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	9.5	0.8369
AT3G27870			ATPase E1-E2 type family prote...		Lus10008776 [exp]	10.2	0.7518
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10018834 [exp]	11.6	0.8105
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10009958 [exp]	22.0	0.7962
AT5G57580			Calmodulin-binding protein (.1...		Lus10018437 [exp]	22.4	0.7982

Compare expression of checked genes

Lus10005988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.