Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16420 656 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G09060 215 / 8e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 208 / 1e-59 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 200 / 5e-56 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G07740 187 / 2e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02060 192 / 3e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 189 / 2e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48810 186 / 2e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 184 / 2e-51 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G64320 186 / 3e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030222 [exp] 602 / 0 AT5G16420 377 / 1e-128 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030223 [exp] 303 / 7e-102 AT5G16420 188 / 1e-57 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10038377 [exp] 209 / 9e-60 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 204 / 4e-58 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 205 / 8e-58 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 205 / 1e-57 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005540 [exp] 200 / 2e-57 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 202 / 8e-57 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017658 [exp] 194 / 1e-53 AT1G02060 792 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G031600 [exp] 702 / 0 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G057900 [exp] 213 / 8e-63 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 214 / 3e-61 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G014500 [exp] 206 / 7e-58 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G105700 [exp] 203 / 1e-56 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G148700 [exp] 197 / 1e-55 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G103600 [exp] 194 / 2e-55 AT5G18475 546 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 197 / 7e-55 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 196 / 1e-54 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050400 [exp] 190 / 2e-53 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10005989 pacid=23175087 polypeptide=Lus10005989 locus=Lus10005989.g ID=Lus10005989.BGIv1.0 annot-version=v1.0 ATGTTACGCTGTGCTCAATCTCGCAGCCGCCTAACCAACCCAACCTCCACCGCCGCCACCGTGCTCATCCGTTCAATTAAGCAAGCGTCCTCGTTTTCCG CCATTAACGTCGACGCCGAATTCCTCAAATCATACAAAGTAACTCCCCCAATCAAACCCTGGCCGCAGCAGCTCTACCCTAAGCGCCTCGTAACCATGAT CACTCGCCAGCAGAATCTCGACCTCGCACTCCAAATCTTCAAATACGCAGGCAAATACCACCCCGGATTCTCCCACAACTACGACACTTACGAATCCATC ATTCAGAAGCTTTCCAGAGCTCGCGCATTCGAAGCCATGGAGTCTCTCCTCACCGAGCTGCATCATTCCCAAATCAAGTGTGGCGAGAATCTCTTCATAA CCGTGATTCGTAACTACGGACTCGCCGGGAAGCCGAAGCTCTCCCTCCAGACGTTCGTCCGCATCGAGGAGTTCAAAGTGCAGCGATCGGTGAGGTCGTT GAACACTCTCCTCAACGCGTTCGTGCAGAACAAGAGGTACGATCTCGTCCACTCCATGTTTAAAGATTGTAAGGATAAGTACGGAGTGGTTCCCAATGTC TTCACTGCTAACATTTTGATCAACGCTCTGTGTAAAATGAACGACATGGAAGCTGCACTCCAGGTGTTCGACGAAATGCCTGTAATGAGAATGATCCCGA ATGTAGTGACTTACACTACAATTCTAGCCGGTTACGTTTCGAAAGGCGATATGGAGAAGGCGAAGAAGGTTCTAACCGATCTTTTCGATAAAGGATGGCT CCCTGATGCTACGACCTACACAATCTTGATGGATGGATATTGCAGGCAAGGAAGACTCGCCGATGCTGTCAAAGTTATGGATGATATGGAAGTCGAGCCG AATGATGTTACTTACGGGGTTATGATCGAGGCGTTTAGTCGAGAGAAAAAGTCCGGCGAAGCTTATAATCTCTTCGATGATATGCTGAAGAAGAACTACG TACCGAGCTCTGCTCTATGCTGTAAAGTTATCGATTCGCTGTGCGAAGACGGTAAAGTGGACGATGCTTGCGGGTTGTGGAGGAGGATGCTGAAGAGGAA TTGCTTGCCGGATAATGCGATACTGAGTACGCTTATACACTGGCTTTGTAAAGCTGGGAAAGCTTGGGAAGCAAGGAAGCTGTTTGACGAGTTCGAGATT GGTTCGAGTCCGAGTCTTTTGACCTACAACACCCTGATTGCGGGGATGTGTGGTTGTGGTGAGCTGGGGGAGGCTGGGAAGCTGTGGGATGACATGTTGG AGAAAGGTCATAAGGCGAATGCTCTCACTTATAGCTTGTTGATCAAGGGGTTCTGTGAAGGTGGGAATGTGAAGGAAGGGATTAAGATTCTGTTAGAGAT GTTGAGCGATGGATGCCGGCCTGAGAGGTCTACTTACGAGTTGTTGATCGGACGATTGAGGGAATTGCGGATGGAAGGAGTTGTGTGTAATGTGGTTTCG ATGGCGATCAAGCGTGATGGTGTTGATGAGCTTTTCTTGAAGGATTCTGTCTGCTGTAGAGAGGAGGAAGAGTGTTGTTCATAA
AA sequence Show only first row Show all	>Lus10005989 pacid=23175087 polypeptide=Lus10005989 locus=Lus10005989.g ID=Lus10005989.BGIv1.0 annot-version=v1.0 MLRCAQSRSRLTNPTSTAATVLIRSIKQASSFSAINVDAEFLKSYKVTPPIKPWPQQLYPKRLVTMITRQQNLDLALQIFKYAGKYHPGFSHNYDTYESI IQKLSRARAFEAMESLLTELHHSQIKCGENLFITVIRNYGLAGKPKLSLQTFVRIEEFKVQRSVRSLNTLLNAFVQNKRYDLVHSMFKDCKDKYGVVPNV FTANILINALCKMNDMEAALQVFDEMPVMRMIPNVVTYTTILAGYVSKGDMEKAKKVLTDLFDKGWLPDATTYTILMDGYCRQGRLADAVKVMDDMEVEP NDVTYGVMIEAFSREKKSGEAYNLFDDMLKKNYVPSSALCCKVIDSLCEDGKVDDACGLWRRMLKRNCLPDNAILSTLIHWLCKAGKAWEARKLFDEFEI GSSPSLLTYNTLIAGMCGCGELGEAGKLWDDMLEKGHKANALTYSLLIKGFCEGGNVKEGIKILLEMLSDGCRPERSTYELLIGRLRELRMEGVVCNVVS MAIKRDGVDELFLKDSVCCREEEECCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10005989 [exp]	0	1
AT4G25270		OTP70	organelle transcript processin...		Lus10031134 [exp]	7.4	0.7508
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	11.3	0.7317
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021068 [exp]	14.6	0.7324
AT5G25500			unknown protein		Lus10002031 [exp]	17.1	0.7395
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10037505 [exp]	17.2	0.7048
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10016511 [exp]	17.9	0.7265
					Lus10015575 [exp]	19.9	0.6492
AT3G58900			F-box/RNI-like superfamily pro...		Lus10035564 [exp]	21.0	0.7145
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005876 [exp]	23.5	0.6930
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10001557 [exp]	28.0	0.6652

Compare expression of checked genes

Lus10005989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.