Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01200 207 / 8e-68 ATRAB-A3, AtRABA3 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1) AT5G47960 171 / 6e-54 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) AT5G65270 171 / 6e-54 AtRABA4a RAB GTPase homolog A4A (.1) AT4G39990 164 / 6e-51 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT3G12160 162 / 2e-50 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) AT1G09630 149 / 2e-45 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT5G45750 147 / 1e-44 AtRABA1c RAB GTPase homolog A1C (.1) AT4G18800 144 / 2e-43 AthSGBP, AtRab11B, AtRABA1d RAB GTPase homolog A1D (.1) AT1G28550 141 / 3e-42 AtRABA1i RAB GTPase homolog A1I (.1) AT3G15060 141 / 3e-42 AtRABA1g RAB GTPase homolog A1G (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030221 [exp] 300 / 9e-106 AT1G01200 202 / 2e-66 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1) Lus10023153 [exp] 161 / 6e-50 AT5G65270 396 / 3e-142 RAB GTPase homolog A4A (.1) Lus10021023 [exp] 169 / 7e-50 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10023829 [exp] 166 / 7e-50 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10000637 [exp] 160 / 1e-49 AT5G65270 395 / 8e-142 RAB GTPase homolog A4A (.1) Lus10025738 [exp] 159 / 3e-49 AT5G65270 404 / 4e-145 RAB GTPase homolog A4A (.1) Lus10035924 [exp] 159 / 4e-49 AT5G65270 404 / 3e-145 RAB GTPase homolog A4A (.1) Lus10016284 [exp] 154 / 4e-47 AT3G12160 386 / 2e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10012032 [exp] 151 / 5e-46 AT3G12160 379 / 1e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102200 [exp] 231 / 2e-77 AT1G01200 332 / 2e-116 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1) Potri.002G175700 [exp] 224 / 2e-74 AT1G01200 333 / 4e-117 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1) Potri.006G057700 [exp] 167 / 2e-52 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.007G096000 [exp] 165 / 1e-51 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.001G270100 [exp] 164 / 3e-51 AT3G12160 379 / 2e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.005G073000 [exp] 161 / 4e-50 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.016G050400 [exp] 161 / 5e-50 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.003G004100 [exp] 146 / 3e-44 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.010G197200 [exp] 146 / 4e-44 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.004G061000 [exp] 145 / 9e-44 AT4G18800 392 / 9e-141 RAB GTPase homolog A1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10005990 pacid=23175059 polypeptide=Lus10005990 locus=Lus10005990.g ID=Lus10005990.BGIv1.0 annot-version=v1.0 ATGAGTTCTGCTTCGATTCCAAGTCCACAATTGGCGTCGAGTTCCAGACCAGAACCGTCAGTATCAAAGGCAAGGGCATCAAGGCTCAGATCTGGGACCC CGCCGGCCAAGAGAGGTTCATACAGGGCAGTTACAAGCGCATACTACAGAGGAGCACTAGGAGCAATGCTGGTGTACGACATCACAAAGAGGCCGACTTT CGACCACGTGGCGAGATGGGTGGAGGAGCTCCGGGCGCACGCCGACAGCTCAATCGTGATCATGCTGATCGGCAACAAGGCTGATCTAGCAGGTGACCAC AGGGCAGTCCCCACAGAGGACGCGGTGGAGTTTGCCGAGGAGCAGGGGCTCTTCTTCTCGGAGGCGTCCGCGATGAGCGGGGACAACGTGGACAAGGCCT TCTTCCAGGTCTTGGAGAAGGTACACGCCGCAGTGTCGAAGAAGTCGTTGCAGGCTGCAGCGGCTTCCGACACCGTGAAATCGAACGGTGTGTTGCAAGG GGATAGGATTGATGTGATTAGTGGGGCGGATATGGAGATAAGTGAGATGAAGAAGTTGCCTTCTTGTTCTTGTTGA
AA sequence Show only first row Show all	>Lus10005990 pacid=23175059 polypeptide=Lus10005990 locus=Lus10005990.g ID=Lus10005990.BGIv1.0 annot-version=v1.0 MSSASIPSPQLASSSRPEPSVSKARASRLRSGTPPAKRGSYRAVTSAYYRGALGAMLVYDITKRPTFDHVARWVEELRAHADSSIVIMLIGNKADLAGDH RAVPTEDAVEFAEEQGLFFSEASAMSGDNVDKAFFQVLEKVHAAVSKKSLQAAAASDTVKSNGVLQGDRIDVISGADMEISEMKKLPSCSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10005990 [exp]	0	1
AT1G56423			unknown protein		Lus10020695 [exp]	7.0	0.8229
AT5G48385			FRIGIDA-like protein (.1)		Lus10001723 [exp]	19.4	0.7256
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10004221 [exp]	28.4	0.7877
AT1G25682			Family of unknown function (DU...		Lus10034268 [exp]	29.7	0.7892
AT2G36900		ATMEMB11, MEMB1...	membrin 11 (.1.2)		Lus10020302 [exp]	31.8	0.7588
AT2G25670			unknown protein		Lus10033084 [exp]	37.7	0.7640
AT1G26940			Cyclophilin-like peptidyl-prol...		Lus10037197 [exp]	42.5	0.7727
AT4G39235			unknown protein		Lus10021065 [exp]	44.0	0.7757
AT1G76200			unknown protein		Lus10016001 [exp]	45.4	0.7660
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10032532 [exp]	61.0	0.7456

Compare expression of checked genes

Lus10005990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.