Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53560 144 / 2e-45 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT2G32720 140 / 1e-43 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT5G48810 137 / 2e-42 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT2G46650 115 / 6e-34 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1) AT1G26340 106 / 2e-30 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT1G37130 66 / 2e-13 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G60660 62 / 2e-13 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) AT1G77760 63 / 2e-12 GNR1, NIA1 nitrate reductase 1 (.1) AT3G61580 52 / 2e-08 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) AT5G09680 49 / 2e-07 RLF reduced lateral root formation (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030219 [exp] 228 / 1e-78 AT5G53560 151 / 4e-48 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10012615 [exp] 153 / 6e-49 AT2G32720 135 / 4e-42 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10010111 [exp] 144 / 2e-45 AT2G32720 137 / 8e-43 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10008838 [exp] 144 / 4e-45 AT5G53560 232 / 3e-80 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10022357 [exp] 144 / 4e-45 AT5G53560 231 / 2e-79 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10043137 [exp] 133 / 5e-41 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10032612 [exp] 133 / 5e-41 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10011858 [exp] 132 / 3e-40 AT2G32720 211 / 5e-72 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10022794 [exp] 131 / 4e-40 AT2G32720 211 / 1e-71 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G054300 [exp] 146 / 4e-46 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.001G314200 [exp] 142 / 2e-44 AT2G32720 199 / 3e-67 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.002G242500 [exp] 135 / 6e-42 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.012G024600 [exp] 124 / 1e-37 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.015G007600 [exp] 122 / 9e-37 AT5G53560 153 / 8e-49 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.010G156900 [exp] 94 / 2e-25 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.014G019200 [exp] 89 / 1e-23 AT5G48810 115 / 8e-34 ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) Potri.018G087600 [exp] 60 / 2e-12 AT1G60660 155 / 4e-50 ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) Potri.002G088600 [exp] 61 / 1e-11 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.005G172400 [exp] 59 / 8e-11 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Lus10005992 pacid=23175054 polypeptide=Lus10005992 locus=Lus10005992.g ID=Lus10005992.BGIv1.0 annot-version=v1.0 ATGGAATCTAATCAACCCAGAATCCATGAGTTCAATGAAGTGGTAAAGCACAAAGATCGCCAAGATTGCTGGCTTCTCATCCACGGCAAGGTGTACAATG TGACAGAGTTCCTGGAAGAACACCCTGGAGGGGAAGAGGTACTCCTTGCATCTACCGAGAAAGATGCCACAGACGATTTCGAAGACGTGGGCCACGGAAA GGATGCTAGGGATATAATGAACAAGTACTGCATCGGAGACATCGATCCCGAAAGCATCCCCTCGGGCAAGAAGTTCAACAACCCGCATGTCCATGTGGTT CCTAAGGAGCCTCGGCACAACTCGTTCATGATCAAGTTGCTTCAGTTTCTCCTCCCGTTGATTGTCTTCATTGTCGCGTTCGCTGCTCGGACTGCTCTCA AGAAAGACTAG
AA sequence Show only first row Show all	>Lus10005992 pacid=23175054 polypeptide=Lus10005992 locus=Lus10005992.g ID=Lus10005992.BGIv1.0 annot-version=v1.0 MESNQPRIHEFNEVVKHKDRQDCWLLIHGKVYNVTEFLEEHPGGEEVLLASTEKDATDDFEDVGHGKDARDIMNKYCIGDIDPESIPSGKKFNNPHVHVV PKEPRHNSFMIKLLQFLLPLIVFIVAFAARTALKKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10005992 [exp]	0	1
AT4G25030			unknown protein		Lus10041414 [exp]	2.2	0.9080
AT1G49050			Eukaryotic aspartyl protease f...		Lus10042982 [exp]	3.5	0.8942
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10036754 [exp]	4.6	0.8783
AT3G52730			ubiquinol-cytochrome C reducta...		Lus10021364 [exp]	6.6	0.8484
AT2G19460			Protein of unknown function (D...		Lus10011939 [exp]	7.7	0.8746
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10032079 [exp]	10.5	0.8523
AT1G12440			A20/AN1-like zinc finger famil...		Lus10028903 [exp]	10.6	0.8952
					Lus10008052 [exp]	10.7	0.8823
AT3G43740			Leucine-rich repeat (LRR) fami...		Lus10002117 [exp]	13.4	0.8924
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10022434 [exp]	15.0	0.8345

Compare expression of checked genes

Lus10005992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.