Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46640 73 / 1e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030218 [exp] 436 / 1e-154 AT2G46640 68 / 1e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102600 [exp] 122 / 8e-33 AT2G46640 104 / 2e-26 unknown protein Potri.002G175300 [exp] 115 / 1e-30 AT2G46640 76 / 4e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005993 pacid=23175074 polypeptide=Lus10005993 locus=Lus10005993.g ID=Lus10005993.BGIv1.0 annot-version=v1.0 ATGAAGATCTTCAATTGGGTGCAGAGAAGGATCCGTCCAAGTGACTCCTCCAGAGATGGGTTGGTTGGAAATGTCATGAAATCTGAATCCATCAGAAGCG ATGCTGATCAGGAGCAAATAGTACTGAGACAGCCTGCTCTTGTTGAGGTTCTTGATGGTTGGAAAGATAGCATGCTGACAATTGGCACATTAGGCTTCGA TCTGGTAAAACCCTCTGAATACTCTGTTCTTAAAGACGGGGACGAAGGAATCAAAATACCTGACCAACATCAGCAACAAGAAGAAGAAGATGACAACCAT GAGAAGAGCAGTAATGAAGAAGATGAGGTCAACCCTTTGATGTATACAACATTTCCAGTCAGCGGGTTGATTTCAGACTCGGATGCTGAGAAACCTCAAG TTGTGTCGTTGAGTGAGATCGAGATCGAATGTGTCGCTGCCTTTGATGAGAATCCTGGAGGGAAGATATTAAGGGGAGAAAGGACAACCCTGGCCGAACT GTTTCTCGCCGAATCTGATCAGGACCTGAAAATGAAGGCAGATAATTGTGTGGACTGTACTACTACTGCTACTACAACCATGGAGCCAAAGTCAGGTAAA AAGAAGCTCAAGCATGGTTCAAAGAATGGCTTTCCTTTTGTCAAGAAGCTCAAGCATGGTGTCGGGATGGAGGATTCGTCGAAAAAAATTCGCCATATGG TGAAGAAGTTGTTGACGAGGAAAATCCATCCTGTTCAGGAATCCAAGCAATGCTGCGTTTCTGACAACGGTAACCACCGAAACCAAGAAGCGGGTGAATC GGTTTGCCTGCTTCAGGCTCGTCCAGGTATCATTTCCGTTTTCCACGTATTTCAAATTCATCCTCCTCGTAACGAGCTTTAG
AA sequence Show only first row Show all	>Lus10005993 pacid=23175074 polypeptide=Lus10005993 locus=Lus10005993.g ID=Lus10005993.BGIv1.0 annot-version=v1.0 MKIFNWVQRRIRPSDSSRDGLVGNVMKSESIRSDADQEQIVLRQPALVEVLDGWKDSMLTIGTLGFDLVKPSEYSVLKDGDEGIKIPDQHQQQEEEDDNH EKSSNEEDEVNPLMYTTFPVSGLISDSDAEKPQVVSLSEIEIECVAAFDENPGGKILRGERTTLAELFLAESDQDLKMKADNCVDCTTTATTTMEPKSGK KKLKHGSKNGFPFVKKLKHGVGMEDSSKKIRHMVKKLLTRKIHPVQESKQCCVSDNGNHRNQEAGESVCLLQARPGIISVFHVFQIHPPRNEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46640			unknown protein		Lus10005993 [exp]	0	1
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10022720 [exp]	1.0	0.9417
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006307 [exp]	1.4	0.9347
					Lus10015620 [exp]	2.0	0.9042
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024716 [exp]	2.4	0.9088
AT1G24110			Peroxidase superfamily protein...		Lus10004234 [exp]	2.8	0.8846
AT3G58720			RING/U-box superfamily protein...		Lus10040151 [exp]	7.3	0.8821
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10025196 [exp]	7.7	0.8264
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033786 [exp]	7.9	0.8884
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042433 [exp]	8.2	0.8638
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	8.4	0.9022

Compare expression of checked genes

Lus10005993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.