Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46630 91 / 1e-19 unknown protein AT1G63310 47 / 4e-06 unknown protein AT1G75260 49 / 6e-06 oxidoreductases, acting on NADH or NADPH (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030217 [exp] 461 / 2e-161 AT2G46630 51 / 1e-06 unknown protein Lus10012616 [exp] 78 / 6e-16 AT1G75260 71 / 3e-14 oxidoreductases, acting on NADH or NADPH (.1) Lus10001963 [exp] 55 / 6e-08 AT1G75260 115 / 2e-27 oxidoreductases, acting on NADH or NADPH (.1) Lus10008287 [exp] 44 / 9e-05 AT1G63310 76 / 3e-17 unknown protein Lus10033253 [exp] 44 / 9e-05 AT1G63310 78 / 3e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G175400 [exp] 113 / 3e-27 AT2G46630 107 / 3e-25 unknown protein Potri.014G102466 [exp] 112 / 6e-27 AT2G46630 114 / 1e-27 unknown protein Potri.002G034700 [exp] 47 / 1e-05 AT1G75260 183 / 4e-51 oxidoreductases, acting on NADH or NADPH (.1) Potri.011G149100 [exp] 45 / 1e-05 AT1G63310 95 / 2e-25 unknown protein Potri.001G452900 [exp] 44 / 4e-05 AT1G63310 92 / 3e-24 unknown protein Potri.005G228400 [exp] 44 / 0.0002 AT1G75260 103 / 2e-23 oxidoreductases, acting on NADH or NADPH (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005994 pacid=23175065 polypeptide=Lus10005994 locus=Lus10005994.g ID=Lus10005994.BGIv1.0 annot-version=v1.0 ATGGCCAACAACCAGCAACCAGCTCGCCCCTGGTTCCGGGTCGCTTCCCTTTCCCGACCCGCCCCACCCCAACCTCAATCCCCTCCGCCGCCGCCCCAGG AAGTCACTGTTGCTCCTTCCCAGCCTCGTCCGTTTCGAAACATCTCTCAGCCCAATCCAGTTACTCGCCCGGCTACTGATGGGCCTAGGCCCAGTCCATC TCCTACCCCTGCATTGCAGCCGACACAACAGCCGCCGGTCACCCCTGTATTGCAGCCGACACAACCGCCGCCGCGTTCTGCATCGGTTCCGCCGACTCCA GTCGTCCGGACCACTGGCATTGCTGCTGCTTCTTCTTCGGCTTCAGTCCCATCGTCGCCTACTAACCGAGTGATTTCCTCTATTCCGCCTTCGCCCCTCA CTAAATCGATGCCACCTCCGCCGCCGACGACTGTTTCATCCGTCCCTGCTTCGCCGATTCGGGCTCCGGCTGTGGGTCCAACTACTTCCGTTGTGAATTC ACCGGTTCGTAGTAACCCTGTTTCGGGCACAAAATCGGTTCCGAATTCTCCCCAACTGGCAACGAGGAATTCGCCGGCGATTAGAACTGCTACGGCAGCA GGGGTTGAAACCCCACAACCTCAATCGCCGAAGAAACAATCCACCGCTCCGCCGTCATCCCCGAGAGACGTGAAAACTCCACCACAGTCGCCGAAGACGA AGTCCATCGTCCGGCCGCCGTCTCCCCTGGCGCTGCCGCCGACCCAGTTCAGACCGGAATTCAATTCCCCGCCGGAGGCAGAGCAGAAAACGGTTGTGGT TCAGAACAAGGTTGAGAAGAATCACTCGGCCACCCACAAACTCTGGTCCGCCGGGACCTCGGAAACGGGTAAGAATAATTCGTCAAAATCGGACACCAAC AAGGGGACGAAGATCATCACGATTGCAGGGGAAAACAAGGGAGCGACGATGGAACTGTTCAGGACTCCACGGAAATCCACGTTATCTCTATTTCCCGGGA AGCCCAATTACCTGAACGGGAATTCGGAGGCGAGCTCCGGCAGCAGCAGCGGGGAGGAAGACAGCAACGAGAAGAAGCAGAGAGGCGACGGAGATGGAAG GAGGAAGAAACCGATGAGCGCAATCATGAACAGCAATGTTCAAGGGATTAACAATTCGATCATGTTCAATTCCACGTGTAGCCACCACGACCCGGGCGTT CACCTCGCACTGTCGAGGAAGCCGGTGGGCGGAGGAGGTGGAATGTCCGGCGGCCGCCGTAGCAATGGGTATCAAAGCTAG
AA sequence Show only first row Show all	>Lus10005994 pacid=23175065 polypeptide=Lus10005994 locus=Lus10005994.g ID=Lus10005994.BGIv1.0 annot-version=v1.0 MANNQQPARPWFRVASLSRPAPPQPQSPPPPPQEVTVAPSQPRPFRNISQPNPVTRPATDGPRPSPSPTPALQPTQQPPVTPVLQPTQPPPRSASVPPTP VVRTTGIAAASSSASVPSSPTNRVISSIPPSPLTKSMPPPPPTTVSSVPASPIRAPAVGPTTSVVNSPVRSNPVSGTKSVPNSPQLATRNSPAIRTATAA GVETPQPQSPKKQSTAPPSSPRDVKTPPQSPKTKSIVRPPSPLALPPTQFRPEFNSPPEAEQKTVVVQNKVEKNHSATHKLWSAGTSETGKNNSSKSDTN KGTKIITIAGENKGATMELFRTPRKSTLSLFPGKPNYLNGNSEASSGSSSGEEDSNEKKQRGDGDGRRKKPMSAIMNSNVQGINNSIMFNSTCSHHDPGV HLALSRKPVGGGGGMSGGRRSNGYQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46630			unknown protein		Lus10005994 [exp]	0	1
AT2G46630			unknown protein		Lus10030217 [exp]	1.4	0.9610
AT5G40382			Cytochrome c oxidase subunit V...		Lus10008765 [exp]	2.2	0.9122
AT1G59970			Matrixin family protein (.1)		Lus10030662 [exp]	3.3	0.9032
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10016635 [exp]	3.5	0.9219
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10033886 [exp]	4.0	0.8976
					Lus10028522 [exp]	5.3	0.9109
AT3G26350			unknown protein		Lus10006464 [exp]	5.7	0.9203
AT1G63310			unknown protein		Lus10033253 [exp]	6.0	0.9242
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10041721 [exp]	7.5	0.8953
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005016 [exp]	7.9	0.9063

Compare expression of checked genes

Lus10005994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.