Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46660 646 / 0 CYP78A6 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) AT3G61880 641 / 0 CYP78A9 cytochrome p450 78a9 (.1.2) AT1G01190 624 / 0 CYP78A8 "cytochrome P450, family 78, subfamily A, polypeptide 8", cytochrome P450, family 78, subfamily A, polypeptide 8 (.1) AT1G74110 486 / 5e-168 CYP78A10 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) AT5G09970 476 / 4e-164 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT1G13710 450 / 5e-154 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) AT5G07990 251 / 8e-77 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G31940 228 / 5e-68 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31500 221 / 8e-66 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT1G01280 220 / 4e-65 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030216 [exp] 928 / 0 AT2G46660 697 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10017334 [exp] 598 / 0 AT3G61880 656 / 0.0 cytochrome p450 78a9 (.1.2) Lus10001670 [exp] 564 / 0 AT2G46660 588 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10036627 [exp] 455 / 1e-155 AT5G09970 735 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10035844 [exp] 455 / 1e-155 AT5G09970 729 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10005780 [exp] 438 / 6e-149 AT5G09970 696 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10015788 [exp] 409 / 4e-139 AT1G13710 471 / 1e-163 KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) Lus10012624 [exp] 238 / 6e-72 AT1G01280 769 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) Lus10017742 [exp] 235 / 1e-70 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102700 [exp] 690 / 0 AT2G46660 723 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.002G175200 [exp] 686 / 0 AT2G46660 694 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.003G146800 [exp] 651 / 0 AT2G46660 659 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.001G083900 [exp] 648 / 0 AT2G46660 692 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.005G084500 [exp] 484 / 3e-167 AT5G09970 759 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G200400 [exp] 481 / 5e-166 AT5G09970 681 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.007G081200 [exp] 475 / 2e-163 AT5G09970 743 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.002G060900 [exp] 473 / 9e-163 AT5G09970 703 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.001G054800 [exp] 444 / 2e-151 AT1G74110 502 / 8e-174 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.003G173500 [exp] 441 / 2e-150 AT1G74110 491 / 3e-170 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10005995 pacid=23175086 polypeptide=Lus10005995 locus=Lus10005995.g ID=Lus10005995.BGIv1.0 annot-version=v1.0 ATGAAAACCGAAATCGAAAGCCTCTGGTTATTTGCTCTAGCCTCCAAATGCAACATCATTGCATGCCCCATAACCTTAGCCGCCGTAGCTCTCATCCTCC TCACCATCTCCCTCCTCCACTGGTTTCACCCCGGCGGCCCAGCTTGGGGGAAATACTACTTCCGACAACCAACAACATCCTCTAAATATCTCATCCCCGG TCCGAGAGGGCTCCCGGTAATTGGAAGCATGACCCTGATGGCCTCGCTGGCTCACCGTAGGATCGCTGCGGCGGCTCAAGCTTACAAGGCCACGAGACTC ATGGCCTTCAGTCTGGGTGAGACGCGTGTGATAGTCACGTGCCACCCTGACGTGGCGAGGGAGATACTCAACGGGTCGGTCTTTGTCGACCGACCGGTTA AGGAGTCGGCTTACCAGTTAATGTTCGGTCGGGCCATTGGGTTCGCTCCTTACGGGGTTTACTGGCGAACCCTTCGTAGGATAGCTGCCGCTCACTTGTT TTCTCCGAAGCAGATCAAGGCTTCGGAGTCTCAGCGTCGGGCTATATCCAAGCAAATGGTGGAAGCTTTCATGACGATGGTCGGAAATGGTGGTCTGGTC ACGGTTCGTGGGGTGCTCAAGAAAGCTTCTTTAAACCACATGATGGGTTCGGTTTTTGGTCGGGAGTACGAGTTGGACGGTTCGAATAGCGAGGTTCAGG AGTTGAAGGAGTTGGTTGAACAAGGGTATGAACTTTTGGGTTTACTCAACTGGTCCGACTATCTTCCCTGGTTGGCCGATTTTGACTCGCAGAAAATCCG GTCCAGGTGCTCTGGTTTGGTCCCGAGAGTGAACCGGTTGGTTTCGGGCATAATATCTGAGCATCGATCCCTTCCGTCTGAAGAAACCCGAGACTTCGTC GACGTTCTTCTCTCTCTCCACGGCGCCGACAAATTGTCCGACTCCGACATGATCGCCGTTCTCTGGGAAATGATATTCCGTGGAACTGATACGGTTGCGG TGCTGATCGAGTGGATACTAGCTAGAATGGCTCTCCATCCAGAATCACAATCAACCGTCCACGACGAGCTGGATCGACACGTGGGCAGATCTAGAGCCGT CCAAGAATCTGACATCCAAAGCCTCCCGTACTTACAAGGGGTGGTGAAGGAAGTTTTGAGGCTACACCCGCCCGGCCCACTCCTATCGTGGGCCAGGCTA GCAACTGTCGACACGACTATCGACGGGTACGAAGTTCCAGCTGGAACGACCGCGATGGTTAACATGTGGGCCATATCGCACGATCTGGAGTTTTGGTCGG ATCCGCTGGAGTTCATGCCGGAGAGATTTGTTGGTGGGGGTGATGCAATTGAAATGTCGGTGATGGGCTCGGACCTCAGGTTGGCTCCGTTCGGATCAGG TAGGCGGGCCTGCCCGGGAAAGAATTTGGGGATTGCAACTGCGTCGTTTTGGATCGCAACGATACTACATGAGTTCGAAGTGACGTCTGTGGCCGTGGGT GGCGGGGTTGACTTGTCTGAAGTGTTGAAGCTTTCTTGTGAGATGGCTACACCGTTAACCGTTAGACTGCGGCCCAGACGTGTGGTGAAGTGA
AA sequence Show only first row Show all	>Lus10005995 pacid=23175086 polypeptide=Lus10005995 locus=Lus10005995.g ID=Lus10005995.BGIv1.0 annot-version=v1.0 MKTEIESLWLFALASKCNIIACPITLAAVALILLTISLLHWFHPGGPAWGKYYFRQPTTSSKYLIPGPRGLPVIGSMTLMASLAHRRIAAAAQAYKATRL MAFSLGETRVIVTCHPDVAREILNGSVFVDRPVKESAYQLMFGRAIGFAPYGVYWRTLRRIAAAHLFSPKQIKASESQRRAISKQMVEAFMTMVGNGGLV TVRGVLKKASLNHMMGSVFGREYELDGSNSEVQELKELVEQGYELLGLLNWSDYLPWLADFDSQKIRSRCSGLVPRVNRLVSGIISEHRSLPSEETRDFV DVLLSLHGADKLSDSDMIAVLWEMIFRGTDTVAVLIEWILARMALHPESQSTVHDELDRHVGRSRAVQESDIQSLPYLQGVVKEVLRLHPPGPLLSWARL ATVDTTIDGYEVPAGTTAMVNMWAISHDLEFWSDPLEFMPERFVGGGDAIEMSVMGSDLRLAPFGSGRRACPGKNLGIATASFWIATILHEFEVTSVAVG GGVDLSEVLKLSCEMATPLTVRLRPRRVVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10005995 [exp]	0	1
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10037650 [exp]	1.4	0.8715
AT3G06240			F-box family protein (.1)		Lus10026587 [exp]	3.5	0.8102
AT4G37440			unknown protein		Lus10019305 [exp]	3.7	0.7865
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10002176 [exp]	4.0	0.8652
AT1G05820		ATSPPL5	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10001154 [exp]	8.1	0.7600
AT2G34140	DOF	AtDof2. 3	Dof-type zinc finger DNA-bindi...		Lus10001896 [exp]	8.4	0.8064
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10032580 [exp]	10.2	0.8157
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10030216 [exp]	12.0	0.8380
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015632 [exp]	13.3	0.7900
AT5G62960			unknown protein		Lus10027692 [exp]	14.5	0.7906

Compare expression of checked genes

Lus10005995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.