Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22290 176 / 7e-52 Ubiquitin-specific protease family C19-related protein (.1) AT1G16860 177 / 1e-51 Ubiquitin-specific protease family C19-related protein (.1) AT1G78880 172 / 5e-50 Ubiquitin-specific protease family C19-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030215 [exp] 479 / 3e-170 AT1G78880 195 / 3e-57 Ubiquitin-specific protease family C19-related protein (.1) Lus10033374 [exp] 172 / 9e-50 AT1G16860 702 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Lus10034825 [exp] 171 / 9e-49 AT1G16860 677 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G176200 [exp] 283 / 5e-95 AT4G22290 189 / 6e-57 Ubiquitin-specific protease family C19-related protein (.1) Potri.011G022600 [exp] 179 / 4e-53 AT4G22290 451 / 4e-157 Ubiquitin-specific protease family C19-related protein (.1) Potri.008G006100 [exp] 178 / 3e-52 AT1G16860 714 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.010G252500 [exp] 176 / 2e-51 AT1G16860 646 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.004G002000 [exp] 174 / 5e-51 AT4G22290 381 / 1e-129 Ubiquitin-specific protease family C19-related protein (.1) Potri.010G252000 [exp] 174 / 8e-51 AT1G16860 685 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.010G252400 [exp] 174 / 1e-50 AT1G16860 647 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.008G006000 [exp] 173 / 2e-50 AT1G16860 652 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005996 pacid=23175071 polypeptide=Lus10005996 locus=Lus10005996.g ID=Lus10005996.BGIv1.0 annot-version=v1.0 ATGAACGACGGAGACGAAGAATCAGCACAAGATCCGAACAAAAACGACAACACGAAGAGCTGCTGCCTTCCAATTATCCCCACCATTTCCATATACATCA TCATCTTCCTCTTCTTCCTCGGCATCTCTGTTTCCACCTTCATACTCGTCGTCGTTCACAGCCCCTTCTTTCTACTTGCATTCCTTCTTCTCTCCGCTTT CGTCGCCTCTTTCCTTGGCTGGAACCACCTTCATTATTCGCATCGGAAAACCGCCGCTTGGGACCTGCTTCTTCGTCGTTCTAATTCCCCCCACTCCGAC GACCTCGCTTCCGCTTCCCACGGCCAGCTCGTTAAGCTCACTGGGTTTGCATCTTGCAGCAATGTTTCCTTGGAATCATCTTATGAAAGAGCAACCAGGT GTATGTACACATCTACACTTCTCTATGAATATGGAGGAGTTGCTTCCTGTTTCCAGTGGAACTTGAGATTCTGTGAGAGATTCTCCACAGACTTTTACAT TACCGACCGGAAATCTGGCATTAGGGCTCTCGTAAAAGCCGGAAATGGTTGTAAAGTCTTCCCCTTGATCAATGAGAACAAACTTGTGACTACTACTAGA AGTTGCAGAGCCCTATCCCCTTACCTCAGGAACTGGCTGCAAAGCAGAAACCTTTCAACCGAAATCCGCCTGCTACGTCTCGAAGAAGGGTATGTGCAAG AAGGCAGCTTGGTGAGTGTGGTAGGAACAGTTGAGAAGAGCATTAATGATGACCTAATGATGATAGTCCAGCCGCGAGATGTTTTGTCGACGGGTTGCTT GTGGCGCAAATTTCTTCTTCCGGTGGAGGTTGATGGTTTAATACTTGCAGTAGTTCCTGAAGTGAATACTGCCTCTAGCTATCATGAACCCAGATTGCAG GAATCACCTGGTACTCTACCTCCCTAG
AA sequence Show only first row Show all	>Lus10005996 pacid=23175071 polypeptide=Lus10005996 locus=Lus10005996.g ID=Lus10005996.BGIv1.0 annot-version=v1.0 MNDGDEESAQDPNKNDNTKSCCLPIIPTISIYIIIFLFFLGISVSTFILVVVHSPFFLLAFLLLSAFVASFLGWNHLHYSHRKTAAWDLLLRRSNSPHSD DLASASHGQLVKLTGFASCSNVSLESSYERATRCMYTSTLLYEYGGVASCFQWNLRFCERFSTDFYITDRKSGIRALVKAGNGCKVFPLINENKLVTTTR SCRALSPYLRNWLQSRNLSTEIRLLRLEEGYVQEGSLVSVVGTVEKSINDDLMMIVQPRDVLSTGCLWRKFLLPVEVDGLILAVVPEVNTASSYHEPRLQ ESPGTLPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16860			Ubiquitin-specific protease fa...		Lus10005996 [exp]	0	1
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10042908 [exp]	3.9	0.6716
AT5G10370			helicase domain-containing pro...		Lus10012749 [exp]	8.4	0.6592
AT3G58110			unknown protein		Lus10002186 [exp]	10.4	0.6839
AT5G18420			unknown protein		Lus10027578 [exp]	12.8	0.6743
AT4G27660			unknown protein		Lus10015578 [exp]	16.8	0.6876
AT1G23890			NHL domain-containing protein ...		Lus10030849 [exp]	19.0	0.6583
AT3G17120			unknown protein		Lus10010906 [exp]	20.2	0.6544
AT3G58110			unknown protein		Lus10039903 [exp]	23.0	0.6614
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10032004 [exp]	25.7	0.6340
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10041492 [exp]	31.4	0.6267

Compare expression of checked genes

Lus10005996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.