Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46680 155 / 2e-46 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) AT3G61890 142 / 2e-41 HD ATHB12, ATHB-12 ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12 (.1) AT2G22430 102 / 3e-25 HD ATHB6 homeobox protein 6 (.1) AT4G40060 92 / 7e-22 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT5G65310 92 / 9e-22 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT3G01470 86 / 2e-19 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT1G69780 83 / 1e-18 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT1G26960 82 / 2e-18 HD ATHB23 homeobox protein 23 (.1) AT5G15150 81 / 2e-17 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT3G01220 79 / 5e-17 HD ATHB20 homeobox protein 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030214 [exp] 306 / 3e-105 AT2G46680 208 / 5e-67 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10032952 [exp] 102 / 4e-26 AT2G46680 142 / 1e-41 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10008840 [exp] 100 / 4e-25 AT2G46680 140 / 5e-41 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10023159 [exp] 96 / 3e-23 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10042180 [exp] 91 / 4e-21 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 90 / 5e-21 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 87 / 5e-20 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10013277 [exp] 87 / 8e-20 AT3G01470 130 / 2e-36 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10037200 [exp] 86 / 2e-19 AT1G69780 319 / 2e-109 Homeobox-leucine zipper protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G103000 [exp] 204 / 2e-65 AT2G46680 237 / 1e-78 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.002G176300 [exp] 191 / 3e-60 AT2G46680 219 / 1e-71 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.007G097100 [exp] 100 / 8e-25 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.005G071900 [exp] 100 / 2e-24 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.001G083700 [exp] 96 / 6e-24 AT2G46680 132 / 3e-38 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.015G065400 [exp] 98 / 7e-24 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G023700 [exp] 97 / 1e-23 AT2G46680 147 / 4e-43 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.012G070900 [exp] 95 / 1e-22 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.005G161500 [exp] 93 / 3e-22 AT4G40060 187 / 4e-58 homeobox protein 16 (.1) Potri.002G100600 [exp] 92 / 9e-22 AT4G40060 191 / 1e-59 homeobox protein 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10005997 pacid=23175085 polypeptide=Lus10005997 locus=Lus10005997.g ID=Lus10005997.BGIv1.0 annot-version=v1.0 ATGGAATCCGACGGAATTACTGATGTTGCCTACGACAACAAAAACAAGAATATTACAGCAGTCCTCCAAATTCACCGGACAAGTACCAATCATCAAGCTC CACCACCACCACCACATCCACCACCACCAACCAAATTAGAAAGAAGCAGAACAAAAACAACAACAATTACAGCAAGCGGCGGGTCACCGACGAGCAGATC AAGTCAGAGATGCAGACGCGAGACGCGCCGCGACCTCGGAAGGAGCCTCGAGCTGGCCAGGGACCTCGGGCTGCAGCCGCGCCAGGTGGCCATATGGTTC CAGAACAAGCGGGCCAGGTGGAAGTCCAAGCAGCTCGAGCGTGACTACGGCATCCTCAGGGCTAATTACAATAGCTTGGCTTCCCGGTTCGAGTCGCTTA AGAAGGAGAAGCAAGCATTGGCCGCTCAGTTGCAGAAGCTAAATGAGTCGATGATGGAGAACCCAAGAACAGAGCAAGCTGACCATGCAGCTGCAACTTA TAACAGCAGCGAAGGCGAATCCGACAACAGTGTCAAGGACGAAAAGATTAGCCTCGAACCGAAAGCGAAATCGGAGCAAGTACGAGTCGGATTCATGTCC GAAGACGAAAACGACAGCAGTGTAAAGGTGGAGTATTTCGGAGCAGAGGAAGAAGCAGAGGAAGCCAAGTTGATGAGCATGGTTGGTGGTGGTGACGGGT CGCTGACGTCACAGGAAGACTGGGGGAGTTTGGATTCAGATGGAGTTCTGTTCCATGATCAACCCAACACTGATTATCAATGGTGGGAGTTTTGGACTTA A
AA sequence Show only first row Show all	>Lus10005997 pacid=23175085 polypeptide=Lus10005997 locus=Lus10005997.g ID=Lus10005997.BGIv1.0 annot-version=v1.0 MESDGITDVAYDNKNKNITAVLQIHRTSTNHQAPPPPPHPPPPTKLERSRTKTTTITASGGSPTSRSSQRCRRETRRDLGRSLELARDLGLQPRQVAIWF QNKRARWKSKQLERDYGILRANYNSLASRFESLKKEKQALAAQLQKLNESMMENPRTEQADHAAATYNSSEGESDNSVKDEKISLEPKAKSEQVRVGFMS EDENDSSVKVEYFGAEEEAEEAKLMSMVGGGDGSLTSQEDWGSLDSDGVLFHDQPNTDYQWWEFWT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10005997 [exp]	0	1
AT2G39855			unknown protein		Lus10004678 [exp]	3.5	0.9686
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	8.1	0.9655
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Lus10043007 [exp]	8.4	0.9605
AT5G44250			Protein of unknown function DU...		Lus10042660 [exp]	8.5	0.9588
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	9.9	0.9655
AT5G05130			DNA/RNA helicase protein (.1)		Lus10027296 [exp]	11.4	0.9582
AT3G56200			Transmembrane amino acid trans...		Lus10028165 [exp]	11.8	0.9638
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10022616 [exp]	12.0	0.9536
AT1G71090			Auxin efflux carrier family pr...		Lus10036000 [exp]	12.5	0.9551
					Lus10008051 [exp]	14.0	0.9465

Compare expression of checked genes

Lus10005997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.