Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46710 404 / 5e-138 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT4G03100 367 / 1e-123 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT5G22400 350 / 1e-116 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT3G11490 341 / 2e-113 rac GTPase activating protein (.1) AT1G08340 325 / 2e-108 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030213 [exp] 699 / 0 AT2G46710 440 / 1e-151 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10009778 [exp] 355 / 7e-119 AT4G03100 456 / 7e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10024768 [exp] 354 / 9e-119 AT4G03100 475 / 6e-167 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10014213 [exp] 353 / 2e-117 AT5G22400 462 / 4e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10022700 [exp] 352 / 4e-117 AT5G22400 459 / 6e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10020625 [exp] 276 / 2e-88 AT5G22400 362 / 4e-122 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10004864 [exp] 206 / 2e-61 AT5G22400 326 / 6e-108 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G176800 [exp] 478 / 2e-166 AT2G46710 477 / 3e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.014G103600 [exp] 446 / 1e-153 AT2G46710 478 / 2e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.014G135570 [exp] 378 / 3e-127 AT4G03100 500 / 6e-176 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.009G162900 [exp] 367 / 5e-123 AT5G22400 457 / 3e-158 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.016G078200 [exp] 365 / 9e-122 AT5G22400 482 / 7e-168 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.004G201600 [exp] 355 / 2e-118 AT5G22400 429 / 3e-147 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.006G211200 [exp] 355 / 1e-117 AT5G22400 461 / 2e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0409 [flax] [poplar] GAP PF00620 [flax] [poplar] RhoGAP RhoGAP domain CL0409 [flax] [poplar] PF00786 [flax] [poplar] PBD P21-Rho-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005998 pacid=23175061 polypeptide=Lus10005998 locus=Lus10005998.g ID=Lus10005998.BGIv1.0 annot-version=v1.0 ATGACTCTCCTCTCCCGATCTAAATCCTGTGGCCTCGTTGGCGTCACCGAATTCGATTCGGCTCCCGCCGCTCCCACACCTTCCTTCTTCCACCACCGCC GCGGCAGCTCCGGCGCCGTCCGCCGCCATGACGATGAGGAAGACTACGACGACGACGAAGACTGCTCTCCGACCGCGATTTCCACTCCGTTTATCAGTCC CGCTTCCCGGTACAACAACGACGGAGGATTCGCCCGCCGGACGGATCGCTCCGGTAGCAGTAGTGGTGGAAATCAGTTCGCGATTCTGGATATGGTTGTT ACGGCATTGAGGAAGTCCCTCGTCACGTGCAGCGTCGTGGAGAGAGACGACGTCTCTTCATCCTCCACCTCGCTGGATATTAGCTGGCCGACGGAGGTCA AGCACGTGTCGCACGTGACCTTCGACCGCTTCAATGGCTTCCTCGGCTTGCCCCGCGAGCTCGAGCCTGAGCTCCCCCGCAAAGTCCCCAGCGCCAGCGC CAATGTGTTTGGAGTATCTGCAGAATCAATGCAGTGCTCTTACGACGACAGAGGCAACAGTGTACCAACGATTCTTCTGATGATGCAGAGGCGTTTGTAT GTAGAAGGAGGCCTTAAGGCGGAAGGAATATTTCGAATCAATGCGGAGAACAGTCAAGAAGAGTATGTTCGCAGCCAGCTTAACAAAGGAGTTGTTCCTC GCACAATCGATTACCACTGTCTTGCTGGGTTGATTAAGGCATGGTTCAGAGAACTACCATCAGGAGTACTGGATTGTCTAACACCAGAACAAGTGATGCA CTGCAACACAGAAGACGACTGCACCCACCTTGTGAAGATGCTTCCTCCCACCGAATCAGCATTGCTTGACTGGGCCATCAATCTGATGGCCGATGTCGTG GAGCACGAACAATATAACAAAATGAACGCCCGGAATGTTGCTATGGTCTTCGCACCTAACATGACTCAGATGGCTGACCCGTTGACTGCACTGATTCACG CCGTACAAGTGATGAATCTGTTGAAGACATTGATCACGAGAACCATCCGCAAAAGAGCTGTGAAAGCTGCTACCGGGCAAACCAGAACCGAGAAGGAACA ACCACTCGATTCGGGTCTAACCAGTAACATTTCGGGTTCCAACACTACTAGTGACGAAGACGACCAAGAATCAGACTCGATCTCAGTCAGCAGCCCGACA ATGTGCGAGATGCGAACGCTCGAAGAAGAAGAAGATGGATGTAAAGAAGTTTACGAGGAGAATGATCAGCAGCATCGGAGTTTGAGCAGAGGGGTGAGAA GGCTGTGTAGACACCCGATATTCCAGTTCAACAAGCCGGTGGCTTCGGGGTCGAAGAAGATGGGAGATGTTGGGTTTGTAAATAGCAGAGGAGGTGGTAG AGAAGCTGCTTGGGCTTAA
AA sequence Show only first row Show all	>Lus10005998 pacid=23175061 polypeptide=Lus10005998 locus=Lus10005998.g ID=Lus10005998.BGIv1.0 annot-version=v1.0 MTLLSRSKSCGLVGVTEFDSAPAAPTPSFFHHRRGSSGAVRRHDDEEDYDDDEDCSPTAISTPFISPASRYNNDGGFARRTDRSGSSSGGNQFAILDMVV TALRKSLVTCSVVERDDVSSSSTSLDISWPTEVKHVSHVTFDRFNGFLGLPRELEPELPRKVPSASANVFGVSAESMQCSYDDRGNSVPTILLMMQRRLY VEGGLKAEGIFRINAENSQEEYVRSQLNKGVVPRTIDYHCLAGLIKAWFRELPSGVLDCLTPEQVMHCNTEDDCTHLVKMLPPTESALLDWAINLMADVV EHEQYNKMNARNVAMVFAPNMTQMADPLTALIHAVQVMNLLKTLITRTIRKRAVKAATGQTRTEKEQPLDSGLTSNISGSNTTSDEDDQESDSISVSSPT MCEMRTLEEEEDGCKEVYEENDQQHRSLSRGVRRLCRHPIFQFNKPVASGSKKMGDVGFVNSRGGGREAAWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46710			Rho GTPase activating protein ...		Lus10005998 [exp]	0	1
AT4G31250			Leucine-rich repeat protein ki...		Lus10020183 [exp]	1.7	0.8651
AT1G77580			Plant protein of unknown funct...		Lus10010888 [exp]	4.2	0.8625
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10027420 [exp]	4.6	0.8582
AT2G36220			unknown protein		Lus10022709 [exp]	6.6	0.8370
AT3G18060			transducin family protein / WD...		Lus10038960 [exp]	9.4	0.8520
AT5G11710			ENTH/VHS family protein (.1)		Lus10007460 [exp]	15.5	0.8577
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10000679 [exp]	24.7	0.8503
AT1G62790			Bifunctional inhibitor/lipid-t...		Lus10024591 [exp]	29.7	0.8290
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001385 [exp]	29.8	0.8367
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10002498 [exp]	30.0	0.8405

Compare expression of checked genes

Lus10005998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.