Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46830 191 / 8e-55 bHLH ATNIG1, bHLH028 NACL-inducible gene 1 (.1) AT4G17880 152 / 2e-40 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 152 / 3e-40 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G00870 149 / 3e-40 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G32640 147 / 2e-38 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT2G46510 108 / 4e-25 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G01260 100 / 2e-22 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G16430 93 / 3e-20 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09820 83 / 9e-17 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G63650 77 / 6e-15 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030212 [exp] 368 / 8e-126 AT4G00870 135 / 2e-36 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000037 [exp] 145 / 1e-40 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 150 / 2e-39 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 145 / 2e-37 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004575 [exp] 143 / 2e-37 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004574 [exp] 142 / 2e-36 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10035366 [exp] 112 / 9e-27 AT1G32640 376 / 9e-125 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030243 [exp] 101 / 9e-23 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10005966 [exp] 99 / 8e-22 AT1G01260 525 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G176900 [exp] 431 / 4e-148 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G103700 [exp] 405 / 1e-137 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G147300 [exp] 277 / 2e-88 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G083500 [exp] 168 / 8e-47 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G142200 [exp] 140 / 5e-36 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.003G092200 [exp] 139 / 1e-35 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.002G172101 [exp] 114 / 5e-27 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.014G099700 [exp] 110 / 1e-25 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G042000 [exp] 100 / 2e-22 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 96 / 1e-20 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005999 pacid=23175078 polypeptide=Lus10005999 locus=Lus10005999.g ID=Lus10005999.BGIv1.0 annot-version=v1.0 ATGGACGACCTCATAATCTCGCCGTCATCTTCCTCCTCCGTCCTAACCGCTCCTCCTCCGCCCCCGCCGACTCTCCAGCAACGCCTCCAGTTCCTCCTCC AGACCCAAATCCCAGACTGGTGGGCCTACGCCATCTTCTGGCAGACCTCCAACGATGCCGAGTCGGGTCGGGTCTTCCTCTCCTGGGCAGACGGCCATTT CCAAGGCTCCCCTGACTCCCCTCCGAAGCTCACCTCCTCCTCCCCCATCAATGACGTTTCCGCCGCTGGAAACGACGCCGTATCGGAGGCGGAGTGGTTT TACGTGATGTCACTGACCCGCTCCTTCTCCGCCGGTGACGGCGTCCCGGGGAAGGCACTGACCACTGGCTCCCTAATGTGGCTGACCGGATTACACGAGC TCCAGTTCCACAACTGCGATCGGGCCAAGGAGTCCCAGCTCCACGGCGTCAGGACTTTAGTCTGCATCCCTGCCCACGGGGGTGTCGTCGAGATCGCGTC ATGTGACCTCATCAAGGAGAACTGGGGGCTCGTCCAGCAGGTCAAGTCCCTGTTCGGGTCGGATTCATCTACTTCTTCGATCCCCAAAAGTAACCCGCTT CCGTTTAATCTCGACATGAACATCTCGTTCGCCGACATCGGGATCATCGCCGGCATCCAAGAGGACGATTACGACGACGACGACAGAAACAACAACAATA TGGAGAGCAATAATAAGTCATCATTGTTGCTGTCAGTGGAGTCGGAGCATTATTCGGACTCGGATAGTCCGATGAACAAAACGACGCCGTTGTTGAAGAG GGTGCCGAAGAAGAGAGGGAGGAAGCCGGGAATTCCGGGGAAAGGGGCCCCACTGAACCACGTGGAGGCAGAGCGGCAGAGGCGGGAAAAGCTCAACCAC AGATTCTACGCTCTACGCGCGGTTGTCCCCAACGTTTCGAGAATGGACAAGGCGTCCTTGCTGTCCGACGCCGTTTCGTACATCAAGGAGTTAAGAGCAA GGATCGACGAGCTCGAGTCGTCGGGTCGGGTCCCGAACAAGCGGGTGAAATTGGAGGCTCCGGATAACAATAGTAGCACCACCACCACCGCCTCCGCCGT GGAAGACGGCATCGGTGGCGGAGGCGGAATGGCGGCAGCGGGGGCGGATCAGGTGGAGGTGAAGATGGTGGGGAACGACGCGATGATTCGGGTCCAATCG GAGAATGTGAATAGCCATCCGGGGGCGAGGCTGATGGCGGCGCTGCGTGACGTAGACCTCCGTGTTCACCACGCGAGCATGTCGTGTGTGAATGACGTGA TGCATCAGGATGCGGTGGTTAGGGTTCCGGAGGGATTGCGAAGAGAGGACCTGCTCATATCCGCCATTGTTGCAAGATTAGATTTAGAGCTGGTGTAG
AA sequence Show only first row Show all	>Lus10005999 pacid=23175078 polypeptide=Lus10005999 locus=Lus10005999.g ID=Lus10005999.BGIv1.0 annot-version=v1.0 MDDLIISPSSSSSVLTAPPPPPPTLQQRLQFLLQTQIPDWWAYAIFWQTSNDAESGRVFLSWADGHFQGSPDSPPKLTSSSPINDVSAAGNDAVSEAEWF YVMSLTRSFSAGDGVPGKALTTGSLMWLTGLHELQFHNCDRAKESQLHGVRTLVCIPAHGGVVEIASCDLIKENWGLVQQVKSLFGSDSSTSSIPKSNPL PFNLDMNISFADIGIIAGIQEDDYDDDDRNNNNMESNNKSSLLLSVESEHYSDSDSPMNKTTPLLKRVPKKRGRKPGIPGKGAPLNHVEAERQRREKLNH RFYALRAVVPNVSRMDKASLLSDAVSYIKELRARIDELESSGRVPNKRVKLEAPDNNSSTTTTASAVEDGIGGGGGMAAAGADQVEVKMVGNDAMIRVQS ENVNSHPGARLMAALRDVDLRVHHASMSCVNDVMHQDAVVRVPEGLRREDLLISAIVARLDLELV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10005999 [exp]	0	1
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	5.5	0.9389
AT4G27870			Vacuolar iron transporter (VIT...		Lus10037315 [exp]	5.5	0.9244
AT4G28890			RING/U-box superfamily protein...		Lus10011702 [exp]	6.5	0.9234
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020359 [exp]	6.6	0.9278
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10022130 [exp]	9.2	0.9236
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	11.7	0.9383
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10034547 [exp]	12.2	0.9211
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10019070 [exp]	12.6	0.9021
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10025749 [exp]	14.1	0.9209
AT3G44590			60S acidic ribosomal protein f...		Lus10026714 [exp]	14.2	0.8929

Compare expression of checked genes

Lus10005999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.