Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56860 61 / 5e-10 GATA GATA21, GNC GATA, nitrate-inducible, carbon metabolism-involved, GATA TRANSCRIPTION FACTOR 21, GATA type zinc finger transcription factor family protein (.1) AT4G26150 60 / 9e-10 GATA GATA22, CGA1, GNL GNC-LIKE, GATA TRANSCRIPTION FACTOR 22, cytokinin-responsive gata factor 1 (.1) AT5G26930 51 / 8e-08 GATA GATA23 GATA transcription factor 23 (.1) AT5G49300 48 / 2e-06 GATA GATA16 GATA transcription factor 16 (.1) AT4G36620 48 / 3e-06 GATA GATA19, HANL2 hanaba taranu like 2, GATA transcription factor 19 (.1) AT2G18380 47 / 9e-06 GATA GATA20, HANL1 hanaba taranu like 1, GATA transcription factor 20 (.1) AT4G16141 46 / 1e-05 GATA GATA type zinc finger transcription factor family protein (.1) AT1G08010 46 / 2e-05 GATA GATA11 GATA transcription factor 11 (.1.2) AT3G16870 46 / 2e-05 GATA GATA17 GATA transcription factor 17 (.1) AT3G50870 46 / 3e-05 GATA GATA18, HAN, MNP MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040556 [exp] 244 / 1e-78 AT5G56860 59 / 6e-10 GATA, nitrate-inducible, carbon metabolism-involved, GATA TRANSCRIPTION FACTOR 21, GATA type zinc finger transcription factor family protein (.1) Lus10037721 [exp] 48 / 1e-06 AT3G06740 153 / 2e-48 GATA transcription factor 15 (.1) Lus10016849 [exp] 48 / 1e-06 AT3G06740 154 / 6e-49 GATA transcription factor 15 (.1) Lus10029863 [exp] 47 / 5e-06 AT4G16141 90 / 1e-22 GATA type zinc finger transcription factor family protein (.1) Lus10020684 [exp] 46 / 2e-05 AT4G16141 94 / 9e-24 GATA type zinc finger transcription factor family protein (.1) Lus10028301 [exp] 46 / 2e-05 AT3G50870 135 / 4e-39 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Lus10010027 [exp] 44 / 5e-05 AT5G49300 87 / 8e-23 GATA transcription factor 16 (.1) Lus10036329 [exp] 44 / 0.0001 AT1G02700 189 / 1e-57 unknown protein Lus10031464 [exp] 43 / 0.0001 AT3G24050 69 / 3e-15 GATA transcription factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G229200 [exp] 57 / 6e-09 AT4G26150 111 / 3e-28 GNC-LIKE, GATA TRANSCRIPTION FACTOR 22, cytokinin-responsive gata factor 1 (.1) Potri.018G053600 [exp] 57 / 9e-09 AT4G26150 75 / 4e-15 GNC-LIKE, GATA TRANSCRIPTION FACTOR 22, cytokinin-responsive gata factor 1 (.1) Potri.005G020500 [exp] 49 / 5e-07 AT3G06740 67 / 1e-14 GATA transcription factor 15 (.1) Potri.008G213900 [exp] 47 / 2e-06 AT3G06740 126 / 4e-38 GATA transcription factor 15 (.1) Potri.010G001300 [exp] 47 / 3e-06 AT3G06740 135 / 2e-41 GATA transcription factor 15 (.1) Potri.014G124400 [exp] 47 / 3e-06 AT5G49300 106 / 2e-30 GATA transcription factor 16 (.1) Potri.002G199800 [exp] 46 / 8e-06 AT5G49300 112 / 1e-32 GATA transcription factor 16 (.1) Potri.005G122700 [exp] 46 / 2e-05 AT3G50870 198 / 1e-62 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Potri.007G024500 [exp] 46 / 2e-05 AT3G50870 202 / 5e-64 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Potri.008G038900 [exp] 44 / 0.0002 AT3G54810 150 / 1e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Lus10006000 pacid=23140003 polypeptide=Lus10006000 locus=Lus10006000.g ID=Lus10006000.BGIv1.0 annot-version=v1.0 ATGATGAATTCAAATTATCAATATTCCTCCCACCAATTCCCTCCTTTCTCCATAGACCTTAACCAAGATCATCAACACTACCTAAACGCTCATTACGTCA CTACTGCTATTACAACAACAACAAGTAATTCACCATCATCATCATCTTCTTCCCCTCTACCTAATTATCATATCTTCATCAACCCTCCTCCTCCTGCTGC CCAGTACTCCAGCGAAGATACCGATCCAACAACACTGTCCGGTGGTCACTTGGACTACTCCTGGGGGCTTCCTCCTCCAGCAGCAGCTTCCTTCCACCAA TATCAAGCAGCTCCCCAGCTTCTTCTTCAAACGGGCATCACATCATGTATGTATGATCATGAGATGGTGAAAGTAGTAGATCATGATCATCATAACGGAT CGCTAGACAAGATGGAGAAAGAAATGAGTTATGGTGTAGTGGCGCCCAAGTTGAGGATCATGAATCAGAAGAAGAAGCTGACGATCAAGACAAATATTAA AATTCCCAATAACGTAAACGATGTCGAGTCGCCGTCAACTTTACAGCTGCAGCCTGCTGCTATGACTGACAACACCACTACTACTATGAATACAGCAACT AGTAGCAATTCTCCAACGGCGGGTAGTCCTACGGTTAGGGTTTGCTCTGATTGCAACACCACTAAGACTCCTCTCTGGCGTAGCGGACCGCAAGGCCCTA AGGTTTCCTCCTCCTCCGATCCTCCACCTCCTCTTTCCTTAACATCACTGTGCAACGCTTGTGGGATCCGTCAAAGGAAGGCTAGGAGGGCTATGGCAGC AGCTGCAGCCATTGCAGACGGCGGCAAAACCTTAGTTACCCCGCCGCCGTCAACAACCATAAAGCTGAAGACAACATCAGCACCATCTTCATTATGTAAG AAGAGTAAGAAATCGAACAAGATTATTGGGGAATGGACCAACAAGGCGGTGAAGAAAAAGATCAGGAACAACAACTTATCAGCAGCTCAGCCGTCAAGCA ACAACCATCTTCCGCTCAAGAAGCGGCGCAAGTTCACGGCGGCATCCAGAAAGATCAATAATACTACTATTACTACTACTACCTTCGACGGTGTCTGCAG CAACAATACCAATAAGGTGTGTTTCGATGATTTGGCGGCCATATTCAGCAACAGCAATATGATAAATTCTTATCAGAGGGTTTTTCCACAAGATGAAAAG GAAGCCGCCATCTTGCTCATGGCTCTATCTTACGGCTTGGTGCGTACCTGA
AA sequence Show only first row Show all	>Lus10006000 pacid=23140003 polypeptide=Lus10006000 locus=Lus10006000.g ID=Lus10006000.BGIv1.0 annot-version=v1.0 MMNSNYQYSSHQFPPFSIDLNQDHQHYLNAHYVTTAITTTTSNSPSSSSSSPLPNYHIFINPPPPAAQYSSEDTDPTTLSGGHLDYSWGLPPPAAASFHQ YQAAPQLLLQTGITSCMYDHEMVKVVDHDHHNGSLDKMEKEMSYGVVAPKLRIMNQKKKLTIKTNIKIPNNVNDVESPSTLQLQPAAMTDNTTTTMNTAT SSNSPTAGSPTVRVCSDCNTTKTPLWRSGPQGPKVSSSSDPPPPLSLTSLCNACGIRQRKARRAMAAAAAIADGGKTLVTPPPSTTIKLKTTSAPSSLCK KSKKSNKIIGEWTNKAVKKKIRNNNLSAAQPSSNNHLPLKKRRKFTAASRKINNTTITTTTFDGVCSNNTNKVCFDDLAAIFSNSNMINSYQRVFPQDEK EAAILLMALSYGLVRT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26150	GATA	GATA22, CGA1, G...	GNC-LIKE, GATA TRANSCRIPTION F...		Lus10006000 [exp]	0	1
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10015330 [exp]	3.7	0.9063
AT1G19720			Pentatricopeptide repeat (PPR-...		Lus10001230 [exp]	4.6	0.9205
AT2G27550		ATC	centroradialis (.1)		Lus10004886 [exp]	5.2	0.8913
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10025350 [exp]	6.6	0.8568
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10010101 [exp]	8.8	0.8905
					Lus10039807 [exp]	8.8	0.8606
AT4G33940			RING/U-box superfamily protein...		Lus10014366 [exp]	9.4	0.8563
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10025459 [exp]	9.8	0.9037
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031566 [exp]	9.8	0.8980
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031736 [exp]	14.4	0.8866

Compare expression of checked genes

Lus10006000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.