Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004818 [exp] 97 / 1e-22 AT1G17930 56 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10014633 [exp] 90 / 2e-21 AT2G04865 61 / 2e-11 Aminotransferase-like, plant mobile domain family protein (.1) Lus10008761 [exp] 88 / 3e-19 AT2G25010 79 / 1e-15 Aminotransferase-like, plant mobile domain family protein (.1) Lus10006165 [exp] 82 / 8e-18 AT5G45260 66 / 5e-12 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) Lus10022091 [exp] 82 / 7e-17 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10010613 [exp] 68 / 1e-13 ND / Lus10012081 [exp] 68 / 7e-13 AT1G17930 53 / 8e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10010839 [exp] 66 / 9e-12 AT3G30200 47 / 9e-06 Plant transposase (Ptta/En/Spm family) (.1) Lus10033114 [exp] 60 / 3e-10 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03004 [flax] [poplar] Transposase_24 Plant transposase (Ptta/En/Spm family)
Representative CDS sequence Show only first row Show all	>Lus10006003 pacid=23139995 polypeptide=Lus10006003 locus=Lus10006003.g ID=Lus10006003.BGIv1.0 annot-version=v1.0 ATGGCTAACATCGACTTCTCATGCATCGCATCACCCTTCAGCCAAGGGTATCGGACATCACCACCTGTAGCGCCTCCATCTGGCAACTTCAAATCCCTGG GATGGATACAGAGAGCCCTAGCTATATCGGCCTGCAGGTCAACGCTGGATCGAGGTGTTATTGTTCGATATGCCAATATTGTGTTCAAAATTGTTGAAAT TGGATACAATACAAGTGGTGGATCTGGTGGTCCGGATGGTAATGGTTGGCAAGATCCTGACAAGGACAAGGGGTATTGGAATGTCAATGAAAAAGTGAAG ACAAACAAAGAAAATAAAGCAAAGCAAAAGAGGCGCAATAGAGGAGATGCTAGGCCTTATGATTCCATACAAGCACGGCTGAAGGTGGAACTTGGTTATA CCACTTCTAGAGCTCAAATTTGGCTCGAAGCAAACAAAAAGAAAGATGGGAGCTACAGTGATGACCAAGCGGCTCTTGCGGCTTTGATGACACAATATGA TGATGAAGCCGGGGTTCCAAAGGAACATAATCCAGGAGATGTTTTTGATTTGGCACACAAGGCTTATGATGTTGATTACAAGGGGGAGCACTCTGGAAGA GTGAGGGAAGAGTTTTGGATTCTCAACACGTTGAGTAAGGATGCTAATGATTTACTTGGTGACATACCCTCTAGTGCACCTGAAGCATCAATGTCTAGAG AAGATAGACCTATCGACTTGGAGGCTCGCATGGCTCGCATGAGAGAGGAGATGGATCGAGCTTATGCGGAGAAGCTACAAAACGAGCTAGATAACCAAGC ATGGAGTGTTCGGCAAAAGGTATATGAAGATATGACCATGGAGATGAACATAAAGTTAATGGAGAAAGAGAAACGTATGGAAGAGAAAATGGATAGAAAG ATGGATGAAAAATTGAAGAATTTGGTGGCGGAGTTGATTGGTCAAGGCAAATCTTCATCCCAAAGCAAAAAATTGGTAAAAGTTTTATTAATGAGTTTTA TACTAAATTGGTAG
AA sequence Show only first row Show all	>Lus10006003 pacid=23139995 polypeptide=Lus10006003 locus=Lus10006003.g ID=Lus10006003.BGIv1.0 annot-version=v1.0 MANIDFSCIASPFSQGYRTSPPVAPPSGNFKSLGWIQRALAISACRSTLDRGVIVRYANIVFKIVEIGYNTSGGSGGPDGNGWQDPDKDKGYWNVNEKVK TNKENKAKQKRRNRGDARPYDSIQARLKVELGYTTSRAQIWLEANKKKDGSYSDDQAALAALMTQYDDEAGVPKEHNPGDVFDLAHKAYDVDYKGEHSGR VREEFWILNTLSKDANDLLGDIPSSAPEASMSREDRPIDLEARMARMREEMDRAYAEKLQNELDNQAWSVRQKVYEDMTMEMNIKLMEKEKRMEEKMDRK MDEKLKNLVAELIGQGKSSSQSKKLVKVLLMSFILNW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006003 [exp]	0	1
AT1G16670			Protein kinase superfamily pro...		Lus10028149 [exp]	2.0	0.8951
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10009404 [exp]	2.4	0.8868
AT1G60560			SWIM zinc finger family protei...		Lus10035898 [exp]	2.6	0.8627
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Lus10009163 [exp]	3.2	0.8870
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10041898 [exp]	7.1	0.8502
AT1G55340			Protein of unknown function (D...		Lus10010312 [exp]	7.3	0.8632
AT4G21192			Cytochrome c oxidase biogenesi...		Lus10019246 [exp]	9.5	0.8542
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010374 [exp]	9.6	0.8740
AT5G65880			unknown protein		Lus10039652 [exp]	11.0	0.8565
					Lus10018566 [exp]	11.2	0.8500

Compare expression of checked genes

Lus10006003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.