Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08315 110 / 2e-29 ARM repeat superfamily protein (.1) AT4G38650 51 / 1e-07 Glycosyl hydrolase family 10 protein (.1) AT4G38300 50 / 1e-07 glycosyl hydrolase family 10 protein (.1) AT4G33860 42 / 0.0001 Glycosyl hydrolase family 10 protein (.1) AT4G33840 42 / 0.0001 Glycosyl hydrolase family 10 protein (.1) AT5G67340 40 / 0.0004 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024145 [exp] 150 / 7e-45 AT1G08315 390 / 2e-136 ARM repeat superfamily protein (.1) Lus10008655 [exp] 149 / 2e-44 AT1G08315 393 / 5e-138 ARM repeat superfamily protein (.1) Lus10039500 [exp] 148 / 7e-42 AT1G08315 383 / 2e-129 ARM repeat superfamily protein (.1) Lus10026170 [exp] 96 / 7e-26 AT1G08315 106 / 6e-29 ARM repeat superfamily protein (.1) Lus10034490 [exp] 75 / 5e-16 AT4G38650 566 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10025054 [exp] 75 / 7e-16 AT4G38650 677 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033784 [exp] 42 / 0.0001 AT4G33820 480 / 2e-160 Glycosyl hydrolase superfamily protein (.1) Lus10014646 [exp] 42 / 0.0001 AT4G33820 336 / 6e-110 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G195400 [exp] 124 / 7e-35 AT1G08315 364 / 1e-126 ARM repeat superfamily protein (.1) Potri.001G028300 [exp] 120 / 2e-33 AT1G08315 343 / 3e-118 ARM repeat superfamily protein (.1) Potri.004G173300 [exp] 49 / 5e-07 AT4G38650 753 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087700 [exp] 44 / 3e-05 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087800 [exp] 42 / 0.0002 AT4G33840 573 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087900 [exp] 39 / 0.001 AT4G33840 695 / 0.0 Glycosyl hydrolase family 10 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10006007 pacid=23139993 polypeptide=Lus10006007 locus=Lus10006007.g ID=Lus10006007.BGIv1.0 annot-version=v1.0 ATGGGTAACAGAGGAAGCAAAACTGATCTATGGAGCAGCCGCCGCCTCAACATCTTCTGGGAAGATCCAAAATACACACCCGAATGGGTCAAACAACTCG CCGACAACCAACTCCACGCCGTCGTCGAATCAAGAATCCGGAGCCTGATGAATCTGCCCATTTGGGTCAACGAAGTCGACATCAAGAAGAAGTTCGACTC CCAAACCCATCTGAATCGGTCCATGATGATTGATCTGGGAGTGGCTCTACCGCTGTTCTTGCTGGTGGTCAAGGACGGGAGGGTGGGGATCGTGGAGGAT GCGACGACTGTGATCGCTCAGACCGTCGGATGCGAGAAGAGCGAGGCAGAATTCAGGAGGGTGTCTGGAATTAGGGTACTAGTGGATCTATTAGATGTGG GGACTGGATCGAGCGATAGGGTAAAGGAGAACGCGGTGGGGGCGTTGTTGAATCTGATGAGGAGTGGAAGGAACGCTAGCGGCGAGAGAGGTAGTTACGA TTTAAAGAGGAGATGTTGA
AA sequence Show only first row Show all	>Lus10006007 pacid=23139993 polypeptide=Lus10006007 locus=Lus10006007.g ID=Lus10006007.BGIv1.0 annot-version=v1.0 MGNRGSKTDLWSSRRLNIFWEDPKYTPEWVKQLADNQLHAVVESRIRSLMNLPIWVNEVDIKKKFDSQTHLNRSMMIDLGVALPLFLLVVKDGRVGIVED ATTVIAQTVGCEKSEAEFRRVSGIRVLVDLLDVGTGSSDRVKENAVGALLNLMRSGRNASGERGSYDLKRRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	0	1
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	1.0	0.9566
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	2.0	0.9311
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10003388 [exp]	2.2	0.8636
					Lus10019456 [exp]	2.4	0.9021
AT5G01750			Protein of unknown function (D...		Lus10007360 [exp]	2.6	0.8291
AT1G28270		RALFL4	ralf-like 4 (.1)		Lus10015431 [exp]	2.8	0.8231
AT3G16650			Transducin/WD40 repeat-like su...		Lus10001473 [exp]	3.0	0.8170
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	4.0	0.8976
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10041760 [exp]	6.3	0.7332
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	6.5	0.8321

Compare expression of checked genes

Lus10006007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.