Plant FIBer expression Database

Lus10006008 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42905 47 / 2e-07 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036265
[exp]
47 / 2e-07 AT5G42905 52 / 2e-08 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Lus10011863
[exp]
46 / 7e-07 AT2G32700 909 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Lus10005922
[exp]
42 / 2e-06 AT5G42905 44 / 3e-06 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Lus10034950
[exp]
39 / 9e-05 AT5G42905 42 / 4e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10006008 pacid=23139998 polypeptide=Lus10006008 locus=Lus10006008.g ID=Lus10006008.BGIv1.0 annot-version=v1.0
ATGAGTCTTAATTCGGATGGTTCGGTTCGCTCCAGTTCTATACAAGTTGCAGCTACGGGAGTCATTCGTAACTCGAGTGGTAAAACTGTTGTGGCTTCCT
CTGTCAATTTGGGAATTTCCTCTATTACTAAGGTGGAGATCCGAGGTGCTTTGTTTGGTATGGAGCTCGCGTGGAGGCAGGGGATTCGTAAATTGGAGAT
TCAAGTGATTCAAGCTGTGTTTTGGGGTTGCTCTCGAGTGAGATTGTCCCTCGAAACCAACATGCAAGCTTGTTGA
AA sequence
>Lus10006008 pacid=23139998 polypeptide=Lus10006008 locus=Lus10006008.g ID=Lus10006008.BGIv1.0 annot-version=v1.0
MSLNSDGSVRSSSIQVAATGVIRNSSGKTVVASSVNLGISSITKVEIRGALFGMELAWRQGIRKLEIQVIQAVFWGCSRVRLSLETNMQAC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G42905 Polynucleotidyl transferase, r... Lus10006008
[exp]
0 1
AT4G18050 ABCB9, PGP9 ATP-binding cassette B9, P-gly... Lus10004583
[exp]
2.2 0.8539
AT4G04750 Major facilitator superfamily ... Lus10018957
[exp]
3.2 0.8476
AT3G10740 ATASD1, ARAF1, ... ARABIDOPSIS THALIANA ALPHA-L-A... Lus10031008
[exp]
3.9 0.7742
AT3G50980 XERO1 dehydrin xero 1 (.1) Lus10003340
[exp]
9.9 0.7448
AT5G04390 C2H2ZnF C2H2-type zinc finger family p... Lus10040425
[exp]
10.6 0.7225
AT5G61990 Pentatricopeptide repeat (PPR)... Lus10016725
[exp]
12.2 0.7226
AT5G03455 ACR2, ARATH;CDC... ARSENATE REDUCTASE 2, Rhodanes... Lus10014420
[exp]
15.0 0.8073
AT4G10120 ATSPS4F Sucrose-phosphate synthase fam... Lus10006183
[exp]
18.0 0.7178
AT4G37990 CAD-B2, ATCAD8,... CINNAMYL-ALCOHOL DEHYDROGENASE... Lus10038536
[exp]
21.2 0.8040
AT5G57280 RID2 root initiation defective 2, S... Lus10015533
[exp]
21.4 0.7677

Lus10006008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.