Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26140 1063 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT5G56870 1041 / 0 BGAL4 beta-galactosidase 4 (.1) AT3G52840 1029 / 0 BGAL2 beta-galactosidase 2 (.1) AT3G13750 1021 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G36360 931 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT1G45130 927 / 0 BGAL5 beta-galactosidase 5 (.1) AT2G28470 824 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT5G63810 765 / 0 BGAL10 beta-galactosidase 10 (.1) AT2G32810 736 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G20710 670 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040557 [exp] 1297 / 0 AT4G26140 1001 / 0.0 beta-galactosidase 12 (.1.2) Lus10028848 [exp] 1238 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10008974 [exp] 1234 / 0 AT4G26140 1068 / 0.0 beta-galactosidase 12 (.1.2) Lus10000701 [exp] 1016 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 1013 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 1001 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10024292 [exp] 930 / 0 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1) Lus10041798 [exp] 925 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025980 [exp] 919 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G144500 [exp] 1098 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.003G038500 [exp] 1050 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 1035 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 959 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 943 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 939 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 796 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G099800 [exp] 781 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.017G057900 [exp] 753 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.011G044300 [exp] 748 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10006009 pacid=23139996 polypeptide=Lus10006009 locus=Lus10006009.g ID=Lus10006009.BGIv1.0 annot-version=v1.0 ATGTTGTTGAAGCAGCCGACCCTTGCTTTATTGTTACTGCTGCTATGGGTTTCTACAGTAGTCAAAGCTTCTGTCACTTACGATCGTAAAGCCATAATCG TCAATGGACAGAGAAGGATTCTCCTGTCTGGTTCAATTCACTACCCCAGAAGCACTCCGGAGATGTGGCCTGGCCTTATACAGAAGGCCAAAGATGGAGG ATTGGACGTGATTCAGACATACGTTTTCTGGAATGGACATGAACCATCACCCGGAAATTATTATTTCGAGGATAGATACGACCTGGTGAAGTTCATAAAG CTGATACAACAAGCGGGTCTGTACGTTAACCTCCGGATAGGGCCTTACGTGTGTGCTGAATGGAATTTCGGGGGATTCCCTGTTTGGCTCAAGTATGAGA AAGGGATGTCTTTCAGAACTGACAATGGGCCCTTTAAGGCGGCAATGCAAAAGTTCACGGCGAAGATCGTCAACATGATGAAGCAAGAGAAACTTTTTGA ACCGCAGGGGGGCCCAATTATTCTTTCCCAGATTGAGAATGAGTACGGGCCGGTGGAATATGAGATTGGAGCTCCGGGGAAAGCTTATACGCAATGGGCG GCGAAGATGGCAGTGGGGCTCAACACAGGAGTTCCATGGATTATGTGCAAGCAAGACGATGTTCCTGACCCTTTGATAGATACTTGCAATGCATTTTACT GCGAGAATTTCAAGCCAAAGAAATCATACAGGCCTAAAATGTGGACTGAAGTTTGGACAGGATGGTATACAGGATGGGGAAGTCCAGTGCCATACAGACC AGCAGAAGATTTGGCATTTGCAGTTGCTAGGTTCATTCAGAATGGTGGCTCCTTTGTCAATTATTACATGTATCATGGAGGCACAAACTTTGGTAGAACT GCCGGTGGTCCCTTTGTTGCCACCAGCTATGACTATGACGCTCCTCTTGATGAATATGGTTTAACAAATGACCCAAAGTACACGCACTTAAAAAATATGC ATAAAGCAATCAAGCAATGTGAATCCGCTTTGGTTTCTGCTGATGCCACTGTCAGGTCACTCGGAAAAAGTCAAGAGGCTCATGTATACAGCACAAGTTC AAGGTGTGCTGCATTCCTGGCGAACTACGACGAGAAAAACTGGGCAAAAGTCAAGTTTGGAAATGGTCAATATGATCTCCCACCTTGGTCCATCAGCATA CTACCTGATTGCAAGACTCAAGTTTACAACACAGCAAAGGTTTCTGCTCCGAGAGTGCATAAGAAGATGACTCCAGTGGGTGGGTTTGTGTGGAACTCGT ACATAGATGAAGTTACTTCTGGTTTTGCAAGTGATACAACTACACTTGATGGAATGTTCGAACAACTCTACTTGACCCAGGATTCTTCAGATTATCTATG GTACATGACAGATGTTAAAATAGGTAGTGATGAGGCATTCCTGAAGAATGGAGTAGACCCTGTTCTCACCATCCAGTCAGCTGGACACTTTGTCAATGTT TTTGTCAACGGAAAACTCATTGGAAGCGCCTACGGTGGCGTTGACAATCCTAAGTTAACCTTCAGCAAGAGTGTGAAGCTAAATGTTGGTGTTAACAAGA TAGCATTGTTGAGCGCTTCAGTTGGTCTTGCGAATGTTGGCGTACACTATGAAAATTACAATGTTGGAATACTTGGTCCGGTAACCCTGAAAGGATTGAA TCAGGGGACAGTTGATATGACAAAATGGAAATGGTCTTACAAGGTAGGAGTTGAAGGTGAGAAGTTGCAGCTGAATACCATAACTGGAAGTTCATCTGTT GACTGGGTCGATGGATCGACGTTAGTTAAGAAACAACCATTGTCATGGTATAAGGCAACTTTCAATGCACCAAGAGGGAGCGAACCATTAGCTTTGGACA TGATCAGCATGGGAAAAGGGCAGGTTTGGATCAATGGCCAGAGCATAGGCCGTTACTGGCCTGCGTATAAAGCACAAGGCAACTGCGGCAACTGCTATTA CGGTGGATACTTCACTGAGAAGAAATGTCTCACCAGTTGTGGACAGCCTACACAAAGATGGTACCACGTTCCACGATCATGGCTGAAACCGACTGGGAAC TTGCTGGTAGTGTTTGAAGAATGGGGAGGTGATCCTACCGGGATTTCTATGGTAAAAAGAACTGCAGGTTGA
AA sequence Show only first row Show all	>Lus10006009 pacid=23139996 polypeptide=Lus10006009 locus=Lus10006009.g ID=Lus10006009.BGIv1.0 annot-version=v1.0 MLLKQPTLALLLLLLWVSTVVKASVTYDRKAIIVNGQRRILLSGSIHYPRSTPEMWPGLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIK LIQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYEKGMSFRTDNGPFKAAMQKFTAKIVNMMKQEKLFEPQGGPIILSQIENEYGPVEYEIGAPGKAYTQWA AKMAVGLNTGVPWIMCKQDDVPDPLIDTCNAFYCENFKPKKSYRPKMWTEVWTGWYTGWGSPVPYRPAEDLAFAVARFIQNGGSFVNYYMYHGGTNFGRT AGGPFVATSYDYDAPLDEYGLTNDPKYTHLKNMHKAIKQCESALVSADATVRSLGKSQEAHVYSTSSRCAAFLANYDEKNWAKVKFGNGQYDLPPWSISI LPDCKTQVYNTAKVSAPRVHKKMTPVGGFVWNSYIDEVTSGFASDTTTLDGMFEQLYLTQDSSDYLWYMTDVKIGSDEAFLKNGVDPVLTIQSAGHFVNV FVNGKLIGSAYGGVDNPKLTFSKSVKLNVGVNKIALLSASVGLANVGVHYENYNVGILGPVTLKGLNQGTVDMTKWKWSYKVGVEGEKLQLNTITGSSSV DWVDGSTLVKKQPLSWYKATFNAPRGSEPLALDMISMGKGQVWINGQSIGRYWPAYKAQGNCGNCYYGGYFTEKKCLTSCGQPTQRWYHVPRSWLKPTGN LLVVFEEWGGDPTGISMVKRTAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10006009 [exp]	0	1
AT2G01690			ARM repeat superfamily protein...		Lus10034578 [exp]	2.4	0.9529
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10019848 [exp]	3.9	0.9569
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005659 [exp]	5.3	0.9324
AT5G20950			Glycosyl hydrolase family prot...		Lus10010656 [exp]	5.5	0.9519
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10012990 [exp]	7.0	0.9494
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10025750 [exp]	7.7	0.9530
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10022282 [exp]	8.7	0.9524
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10000076 [exp]	8.8	0.9441
AT1G18270			ketose-bisphosphate aldolase c...		Lus10002140 [exp]	9.0	0.9476
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10022382 [exp]	9.2	0.9358

Compare expression of checked genes

Lus10006009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.