Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29720 209 / 3e-64 ATPAO5 polyamine oxidase 5 (.1) AT2G43020 40 / 0.0008 ATPAO2 polyamine oxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040558 [exp] 436 / 3e-156 AT4G29720 305 / 6e-101 polyamine oxidase 5 (.1) Lus10041898 [exp] 42 / 0.0004 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10029495 [exp] 42 / 0.0005 AT5G13700 587 / 0.0 polyamine oxidase 1 (.1) Lus10029804 [exp] 42 / 0.0005 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G151300 [exp] 236 / 1e-74 AT4G29720 635 / 0.0 polyamine oxidase 5 (.1) Potri.015G074600 [exp] 44 / 6e-05 AT5G13700 395 / 5e-134 polyamine oxidase 1 (.1) Potri.001G263400 [exp] 43 / 0.0002 AT5G13700 734 / 0.0 polyamine oxidase 1 (.1) Potri.009G058200 [exp] 42 / 0.0004 AT5G13700 756 / 0.0 polyamine oxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10006011 pacid=23139994 polypeptide=Lus10006011 locus=Lus10006011.g ID=Lus10006011.BGIv1.0 annot-version=v1.0 ATGGTGGCCAAGAAGCCTAGAATTGTCATCATCGGAGCTGGAATGGCGGGCATCACTGCCGCTCACAAGCTTCACACCTCTGTTCCTGGCCGGAACGAAA TGTTCGAGCTCTTCGTCGTGGAAGGCGGCAAGCGAATCGGGGGCAGAATCAACTCCTCCGAGTTCGCCGGCGACAGGATTGAAATCGGTGCCACGTGGAT CCATGGCATTGACGGCAGCCCTGTCCACCGAATCGCCGGTGAAATCGGTTCCCTAAACTCCGACCGCCCTTGGGAATGGATGGATGGGTTCGTGGAAGAG GGCCGCCGTACAGTTGCCGAAGGTGGATTCAAGATTAACCCTTGTGTCGTCGACTCCGTCTCTACACTATTCAAAAACTTGATGGATTATGCTCGCGGAG AACTGACCAAATCAGTCGCCGCCGACGAGGGACTTGATTTCTTCTACCGGCTTGCTGCTGACGTCGACTCAAAGAGAAGTGTGGGTTCGTTTCTGAGGGA AGGGCTAAATGGTTATTGGAATTCGGTGGAGAAAAATCAGGAGGAAGACGACGTCGTGTTGTTAGGAGAAGAGAAATTCAACAGGAGGTCGATCGAGGAA GCCATTTTTGCAATGCTCGAGAATTGCCAGAGGAACGATACTTCGGCATGCGACCTTGGGACACTGGATTTAAGAGCGGAGAGCGAGTACAGGAAATCAC CATTGCTAAAGGTTATTCGAGTGTCGTCGAATCTCTTGCTTCAGTTCTGCCCCCTGGAGTTATCCAATTAG
AA sequence Show only first row Show all	>Lus10006011 pacid=23139994 polypeptide=Lus10006011 locus=Lus10006011.g ID=Lus10006011.BGIv1.0 annot-version=v1.0 MVAKKPRIVIIGAGMAGITAAHKLHTSVPGRNEMFELFVVEGGKRIGGRINSSEFAGDRIEIGATWIHGIDGSPVHRIAGEIGSLNSDRPWEWMDGFVEE GRRTVAEGGFKINPCVVDSVSTLFKNLMDYARGELTKSVAADEGLDFFYRLAADVDSKRSVGSFLREGLNGYWNSVEKNQEEDDVVLLGEEKFNRRSIEE AIFAMLENCQRNDTSACDLGTLDLRAESEYRKSPLLKVIRVSSNLLLQFCPLELSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006011 [exp]	0	1
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040558 [exp]	1.0	0.9206
AT3G09040			Pentatricopeptide repeat (PPR)...		Lus10010169 [exp]	1.7	0.8915
AT3G14810		MSL5	mechanosensitive channel of sm...		Lus10005555 [exp]	2.4	0.8936
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Lus10016591 [exp]	4.5	0.8829
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10016952 [exp]	5.7	0.8653
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Lus10003767 [exp]	5.7	0.8882
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040559 [exp]	5.9	0.8666
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10016031 [exp]	6.5	0.8672
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10017307 [exp]	9.9	0.8375
AT3G26935			DHHC-type zinc finger family p...		Lus10000146 [exp]	16.4	0.8372

Compare expression of checked genes

Lus10006011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.