Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29720 267 / 1e-86 ATPAO5 polyamine oxidase 5 (.1) AT3G10390 69 / 5e-13 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT3G13682 67 / 2e-12 LDL2 LSD1-like2 (.1) AT4G16310 66 / 5e-12 LDL3 LSD1-like 3 (.1) AT1G65840 65 / 8e-12 ATPAO4 polyamine oxidase 4 (.1) AT1G62830 63 / 3e-11 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G59050 53 / 8e-08 ATPAO3 polyamine oxidase 3 (.1) AT2G43020 50 / 4e-07 ATPAO2 polyamine oxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040559 [exp] 331 / 2e-116 AT4G29720 224 / 4e-71 polyamine oxidase 5 (.1) Lus10012283 [exp] 73 / 2e-14 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10015996 [exp] 70 / 2e-13 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10028817 [exp] 67 / 2e-12 AT3G10390 808 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10017464 [exp] 67 / 2e-12 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10024311 [exp] 66 / 6e-12 AT4G16310 1471 / 0.0 LSD1-like 3 (.1) Lus10033928 [exp] 65 / 9e-12 AT4G16310 1391 / 0.0 LSD1-like 3 (.1) Lus10038587 [exp] 63 / 5e-11 AT3G13682 971 / 0.0 LSD1-like2 (.1) Lus10037885 [exp] 58 / 2e-09 AT3G13682 969 / 0.0 LSD1-like2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G151300 [exp] 303 / 3e-100 AT4G29720 635 / 0.0 polyamine oxidase 5 (.1) Potri.010G227200 [exp] 72 / 3e-14 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.008G035200 [exp] 71 / 6e-14 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.002G027100 [exp] 69 / 3e-13 AT4G16310 1504 / 0.0 LSD1-like 3 (.1) Potri.005G235400 [exp] 69 / 5e-13 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.002G013100 [exp] 68 / 9e-13 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Potri.004G075800 [exp] 67 / 2e-12 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.017G144001 [exp] 66 / 5e-12 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.011G127600 [exp] 62 / 9e-11 AT3G13682 959 / 0.0 LSD1-like2 (.1) Potri.001G263400 [exp] 50 / 5e-07 AT5G13700 734 / 0.0 polyamine oxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10006012 pacid=23140002 polypeptide=Lus10006012 locus=Lus10006012.g ID=Lus10006012.BGIv1.0 annot-version=v1.0 ATGTCGGCTGATCATGTCATAATCACTGTTTCTCTTGGAGTACTGAAAGCTGGAATTGGTCCGAGTTGGAGTCTCTTTAACCCTCCTCTGCCTTTGTTCA AAACTGATGCTATTTCCAGACTTGGGTATGGAGTTGTGAACAAGCTATTCTTGCAGCTTAGCAACGAACAAGGTTCTTCAAATTCAGAGGGTGGCAAGTT TCCGTTCCTTGAGATGGCATTTCACAGGACCAACTCGGAGCACAGACTGAAGGAAATCCCCTGGTGGATAAGGAGGACAGCTTCGTTAACCCCAATTCAC AACAACTCTAATGTGTTGCTGTCATGGTTTACTGGGAAAGAAGCTATTGAGCTGGAATCTATAAGCGACCAAGAGATCATCAATGGTGTTTCAGTAACCA TTTCCGGCTTCTTACCCAACACCACCGACAAAAATACGGGAGTGAAATTCAGTAAGGTTTTAAAGAGTAAATGGGGTAATGACCCTCTATTCTTGGGGTC TTATAGTTATGTTGCAGTTGGTTCAAGTGGAGATGATTTGGATGCAATGGCTCAACCATTGCCGAATGTTTTAGAATGTGACGAGGAGGATGGAGGTTCT ACCCCATTGCCATCTATGCAAATTCTGTTTGCAGGGGAAGCAACACATAGGACCCATTACTCAACAACTCATGGAGCTTACTTCAGTGGGATTAGAGAAG CTAATAGGCTTCTTCAGCATTACCAATGGGTGAAGAAGGGTTTAGACGACTATTAA
AA sequence Show only first row Show all	>Lus10006012 pacid=23140002 polypeptide=Lus10006012 locus=Lus10006012.g ID=Lus10006012.BGIv1.0 annot-version=v1.0 MSADHVIITVSLGVLKAGIGPSWSLFNPPLPLFKTDAISRLGYGVVNKLFLQLSNEQGSSNSEGGKFPFLEMAFHRTNSEHRLKEIPWWIRRTASLTPIH NNSNVLLSWFTGKEAIELESISDQEIINGVSVTISGFLPNTTDKNTGVKFSKVLKSKWGNDPLFLGSYSYVAVGSSGDDLDAMAQPLPNVLECDEEDGGS TPLPSMQILFAGEATHRTHYSTTHGAYFSGIREANRLLQHYQWVKKGLDDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006012 [exp]	0	1
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040559 [exp]	1.4	0.9114
AT4G33170			Tetratricopeptide repeat (TPR)...		Lus10034948 [exp]	3.5	0.8281
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022446 [exp]	4.5	0.8432
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10037947 [exp]	4.9	0.8367
AT5G49690			UDP-Glycosyltransferase superf...		Lus10008955 [exp]	5.7	0.8579
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10030705 [exp]	6.3	0.8385
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10007421 [exp]	6.5	0.8374
AT4G11350			Protein of unknown function (D...		Lus10036382 [exp]	7.7	0.8472
AT4G13990			Exostosin family protein (.1)		Lus10007037 [exp]	12.0	0.8309
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10013692 [exp]	14.7	0.8358

Compare expression of checked genes

Lus10006012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.