Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13898 75 / 7e-17 unknown protein AT5G10310 66 / 2e-13 unknown protein AT1G72690 62 / 3e-12 unknown protein AT4G37810 60 / 5e-11 unknown protein AT2G30370 57 / 4e-10 EPFL6, CHAL EPF1-like 6, CHALLAH, allergen-related (.1.2) AT4G14723 52 / 1e-08 EPFL4, CLL2 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein AT3G22820 51 / 2e-08 EPFL5, CLL1 epidermal patterning factor like 5, CHALLAH-LIKE 1, allergen-related (.1) AT5G57000 53 / 3e-08 unknown protein AT1G17490 49 / 7e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008387 [exp] 182 / 6e-58 AT3G13898 76 / 9e-19 unknown protein Lus10008389 [exp] 128 / 1e-37 AT1G72690 76 / 2e-19 unknown protein Lus10035922 [exp] 64 / 7e-13 AT5G10310 100 / 2e-28 unknown protein Lus10025740 [exp] 64 / 8e-13 AT5G10310 100 / 2e-28 unknown protein Lus10015607 [exp] 61 / 2e-11 AT1G72690 84 / 6e-21 unknown protein Lus10006884 [exp] 62 / 5e-11 AT5G57000 85 / 2e-21 unknown protein Lus10011591 [exp] 60 / 5e-11 AT4G37810 102 / 6e-29 unknown protein Lus10041186 [exp] 53 / 7e-09 AT4G14723 106 / 5e-31 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Lus10021901 [exp] 53 / 7e-09 AT4G14723 104 / 2e-30 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G042300 [exp] 103 / 2e-27 AT3G13898 80 / 4e-20 unknown protein Potri.007G095400 [exp] 66 / 2e-13 AT5G10310 105 / 2e-30 unknown protein Potri.005G073700 [exp] 63 / 3e-12 AT5G10310 102 / 7e-29 unknown protein Potri.002G112900 [exp] 62 / 9e-12 AT4G37810 90 / 9e-24 unknown protein Potri.004G095300 [exp] 61 / 1e-11 AT1G72690 57 / 3e-12 unknown protein Potri.006G148000 [exp] 60 / 6e-11 AT5G57000 83 / 2e-20 unknown protein Potri.017G119600 [exp] 58 / 7e-11 AT1G72690 91 / 2e-25 unknown protein Potri.008G157300 [exp] 53 / 1e-08 AT4G14723 69 / 4e-16 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Potri.013G155500 [exp] 51 / 6e-08 AT2G30370 93 / 7e-25 EPF1-like 6, CHALLAH, allergen-related (.1.2) Potri.019G128200 [exp] 46 / 3e-06 AT2G30370 110 / 7e-32 EPF1-like 6, CHALLAH, allergen-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006016 pacid=23174241 polypeptide=Lus10006016 locus=Lus10006016.g ID=Lus10006016.BGIv1.0 annot-version=v1.0 ATGCCGGAAACGACACAGAAGACATCGCATTCTGAAACAGGTACAGAAGAGAAGCACCGAAAGCCTATAAATGTTATTGAGCAGCAGGTGATGGGACAAG TTGACAAGGAAAAGGAGCATAAACATGATGAGGAGACGCACGGAACAAGCGATGACATTGATGAGTCCACCTCCATTGAAGAAGTCAAAGGACCAGGTGT GTTTCAGAGGGCAAAGGAAGAGGTTGAAGCCATTACTAGGTTTGTAGGTTTGAGGCAGTGGTCAGGTAACAAAAGCTGGAGTGGGTTTACTGTTTCAACG TGTCATGAAAATGTGAAAGGTGCTGCCTTCAGTTGTAGTAGTAGCGTTTTCCATCTTCTTTCTATATCAGTCTCTGCCTTGAGTCTTTTGCCTAATTTTG CTGCTGATTCTGGATACCACTGGAAAGCAAAGGAGCTTAGCCAGGAGAAGGACCACAAGAGATGGACAAAATGCCAAATGGCAGACAATTGTTCTTTCTT TGATGATATGATGAAATGGACGGTCCCGATTAGCGTTTCCCCACCCACCAACCTAAGGTATAATGTGCTTAGCGAGAGCCCCATTCAGCAAGCTGCAGCA TCTAGAACCCATTTGAGCTCAACTCAGTCGCTGCAGGATGGGAGAGAGAAAGAAGCTGCCTTTTTCTCAAAAGAGTTCGGGAGATTAGGGTCAAGTCCGC CGAGCTGTGAACGAAAGTGCTATGGATGTTCTCCATGTGAAGCAATTCAGGTGCCTACAACCAGCAGAAGACATAGCAGCCATGTCCTGAGGCTGAACTA CGCCGACTATAAGCCTGAGGGCTGGAAATGCAAATGTGGCCCTTCTTTTTACAGCCCCTGA
AA sequence Show only first row Show all	>Lus10006016 pacid=23174241 polypeptide=Lus10006016 locus=Lus10006016.g ID=Lus10006016.BGIv1.0 annot-version=v1.0 MPETTQKTSHSETGTEEKHRKPINVIEQQVMGQVDKEKEHKHDEETHGTSDDIDESTSIEEVKGPGVFQRAKEEVEAITRFVGLRQWSGNKSWSGFTVST CHENVKGAAFSCSSSVFHLLSISVSALSLLPNFAADSGYHWKAKELSQEKDHKRWTKCQMADNCSFFDDMMKWTVPISVSPPTNLRYNVLSESPIQQAAA SRTHLSSTQSLQDGREKEAAFFSKEFGRLGSSPPSCERKCYGCSPCEAIQVPTTSRRHSSHVLRLNYADYKPEGWKCKCGPSFYSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13898			unknown protein		Lus10006016 [exp]	0	1
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10037175 [exp]	20.6	0.8043
AT4G00380		FDM2	factor of DNA methylation 2, X...		Lus10005463 [exp]	32.9	0.7987
AT3G14080			Small nuclear ribonucleoprotei...		Lus10013161 [exp]	67.7	0.6956
AT2G47640			Small nuclear ribonucleoprotei...		Lus10007876 [exp]	73.7	0.7808
AT5G13470			unknown protein		Lus10005318 [exp]	81.4	0.6741
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10009889 [exp]	84.9	0.7454
					Lus10014667 [exp]	92.2	0.7288
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10011874 [exp]	97.3	0.7059
					Lus10001007 [exp]	100.0	0.7738
AT5G41010		NRPE12, NRPD12,...	DNA directed RNA polymerase, 7...		Lus10030353 [exp]	111.8	0.7272

Compare expression of checked genes

Lus10006016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.